[gmx-users] Computing RMSD for RNA structure
tsjerkw at gmail.com
Mon Mar 20 11:11:18 CET 2006
If you have the average structure and the reference, you can use g_confrms
to fit them and obtain the rms value. In addition you might want to try the
fitting routine (align) in PyMol (pymol.sourceforge.net), which can omit
On 3/20/06, raja <raja_28 at fastmail.us> wrote:
> Dear GMXIONs,
> How to find out RMSD value between two RNA structures in
> GROMACS ? I want to compare the crystal structure of the RNA
> of my interst with the average structure of RNA after
> simulation. Swisspdb viewer not helpful for this case.
> With thanks !
> raja_28 at fastmail.us
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Tsjerk A. Wassenaar, M.Sc.
Groningen Biomolecular Sciences and Biotechnology Institute (GBB)
Dept. of Biophysical Chemistry
University of Groningen
9747AG Groningen, The Netherlands
+31 50 363 4336
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