[gmx-users] How to generate average C-alpha fluctuation during MD of every AA residue?

David van der Spoel spoel at xray.bmc.uu.se
Thu Mar 23 08:56:27 CET 2006

Shanjie Huang wrote:
> Hi my dear friends,
> I just learn to use gromacs this days and I found a lot of figures in
> research articles that illustrates the average C-alpha fluctuation
> during MD of every AA residue, which can show very clearly that which
> part of protein is stable and which is flexible. But I examined the
> tutor and online manual for every commands yet cannot find the method.
> Please give me a hand. Thanks a lot.
> Shanjie Huang

David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se

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