[gmx-users] Re: How to generate average C-alpha fluctuation during MD of every AA residue?

[Shanjie Huang]

Thanks my friend, I have solve this problem with your kindly help.




> Message: 4
> Date: Thu, 23 Mar 2006 08:56:27 +0100
> From: David van der Spoel <spoel at xray.bmc.uu.se>
> Subject: Re: [gmx-users] How to generate average C-alpha fluctuation
> 	during	MD of every AA residue?
> To: Discussion list for GROMACS users <gmx-users at gromacs.org>
> Message-ID: <442254AB.7080601 at xray.bmc.uu.se>
> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
> 
> Shanjie Huang wrote:
> > Hi my dear friends,
> > 
> > I just learn to use gromacs this days and I found a lot of figures in
> > research articles that illustrates the average C-alpha fluctuation
> > during MD of every AA residue, which can show very clearly that which
> > part of protein is stable and which is flexible. But I examined the
> > tutor and online manual for every commands yet cannot find the method.
> > Please give me a hand. Thanks a lot.
> > 
> > Shanjie Huang
> g_rmsf
> 
> -- 
> David.
> ________________________________________________________________________
> David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
> Dept. of Cell and Molecular Biology, Uppsala University.
> Husargatan 3, Box 596,          75124 Uppsala, Sweden
> phone:  46 18 471 4205          fax: 46 18 511 755
> spoel at xray.bmc.uu.se    spoel at gromacs.org   http://folding.bmc.uu.se
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> 
-- 
  Shanjie Huang
  suibingkuai at 123mail.org

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