[gmx-users] problem with xtc in vmd

[Dallas B. Warren]

Are you using shuffle/sort?  If so, make sure you use the final gro file
with the trajectory file.

No bond formation information is passed to vmd when you load a gro then
xtc file.  It is all based on guesses by vmd due to how far atoms are
form each other in the gro file.  These are then translated to all
frames within the xtc file.

Catch ya,

Dr. Dallas Warren
Lecturer
Department of Pharmaceutical Biology and Pharmacology
Victorian College of Pharmacy, Monash University
381 Royal Parade, Parkville VIC 3010
dallas.warren at vcp.monash.edu.au
+61 3 9903 9524
---------------------------------
When the only tool you own is a hammer, every problem begins to resemble
a nail.