[gmx-users] Hydrogen bonds with version 3.3.1

[Gianluca Interlandi]

> > > The hbond program is rather complex, but the hbond criterion itself is not
> > > (but note that the definition of the angle has changed from 3.2.1 to 3.3,
> > > from
> > > AHD to ADH).
> > 
> > This hasn't been clear to me as the online documentation says DHA:
> > 
> > -a  real  30  Cutoff angle (degrees, Donor - Hydrogen - Acceptor)
> 
> in that case you're running an old version of gromacs. Try
> which g_hbond

I'm using version 3.3.1 (gromacs-3.3.1-1.i386.rpm). I was refering to the 
online documentation:

http://www.gromacs.org/documentation/reference_3.3/online/g_hbond.html

Gianluca

-----------------------------------------------------
Dr. Gianluca Interlandi gianluca at u.washington.edu
                    +1 (206) 685 4432
                    +1 (206) 714 4303
                    http://biocroma.unizh.ch/gianluca/

Postdoc at the Department of Bioengineering
at the University of Washington, Seattle WA U.S.A.
-----------------------------------------------------