[gmx-users] segmentation fault at middle of MD run

[raja]

Dear gmxions,
      In my simulation of protein for 2ns crashed at around 850ps and
      core dumped. Earlier run of simillar system was smooth for 2ns.
      This time I just copied the final full.tpr and full.mdp to
      different machine but same os(Cygwin under windowsXP) to run the
      simulation. I have also pasted the STACKDUMP file for your
      understanding. 

##############################################################################################
Stack trace:
Frame     Function  Args
5564454 [sig] mdrun 1320 handle_threadlist_exception:
handle_threadlist_exception called with threadlist_ix -1
Exception: STATUS_ACCESS_VIOLATION at eip=61015E82
eax=3F86A8BC ebx=610E7ECC ecx=00000000 edx=C081CFA6 esi=00000000
edi=00000001
ebp=188DE6E8 esp=188DE6E4
program=E:\cygwin\usr\local\gromacs\bin\mdrun.exe, pid 1320, thread sig
cs=001B ds=0023 es=0023 fs=0038 gs=0000 ss=0023
Stack trace:
Frame     Function  Args
188DE6E8  61015E82  (610E7ECC, 01A87960, 00000001, 00000000)
188DE708  61015FAC  (00000001, 188DE760, 00000000, 00000000)
188DEA58  610179AB  (00000348, 188DEED0, 000000A4, 188DEE9C)
188DEF98  6108A497  (610E6D18, 00000000, 00000F84, 00000000)
188DEFC8  6100327F  (610E6D18, 188DF000, 61003160, 00000000)
188DEFF8  61003E94  (00000000, 00000000, 00000000, 00000000)
188DFF98  61003EDA  (00000000, 00000000, 00000000, 00000000)
End of stack trace
####################################################################################################

How to fix it to restart this run from this stage.

With thanks!
B.Nataraj
-- 
  raja
  raja_28 at fastmail.us

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