[gmx-users] kappa in Generalized reaction field
gmx3 at hotmail.com
Tue May 16 09:17:00 CEST 2006
>From: Tomoshi Kameda <kameda-tomoshi at aist.go.jp>
>Reply-To: Discussion list for GROMACS users <gmx-users at gromacs.org>
>To: gmx-users at gromacs.org
>Subject: [gmx-users] kappa in Generalized reaction field
>Date: Tue, 16 May 2006 14:35:31 +0900
> > >
> > >Do we want to keep this code at all?
> > Good question.
> > I think simulating ionic solutions with reaction-field causes large
> > artifacts,
> > unless the concentration is very high and the cut-off quite long.
> > PME is a much better choice.
>Recently, I read a paper, which shows the GRF and PME yielded results
>consistent with experiment by using GROMACS ......
I must say that I disagree with this conclusion.
Everybody would probably agree that plain cut-offs produce horrible
This paper shows that the native state is sampled in the same way by
PME and RF. But the sampling of non-native conformations is very different
for PME and RF. Therefore I would conclude that RF is not a good method
for such a system.
BTW in this case, or in general for simulations in water, RF of GRF makes
no difference as any dielectric constant larger than roughly 20 equals
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