[gmx-users] removing some solvent molecules

[Mark Abraham]

gil claudio wrote:
> I have a simulation box with a polymer in the middle
> and solvent molecules surrounding it.  The box ended
> up being much bigger than needed--I'll need to reduce
> its size from 20.0 nm to 15 nm, removing solvent
> molecules in the process.  Is there a way to do this?

Generate fewer waters in the first place? Edit the .gro file by hand?

Mark