[gmx-users] Problems Installing on IBM Netfinity 4500R with Redhat 8.0
Arthur Roberts
aroberts99163 at yahoo.com
Thu Nov 2 09:08:43 CET 2006
Hi, all,
I am attempting to compile Gromacs 3.3.1 on a 256 node
IBM Netfinity 4500R with Redhat 8.0. I already
checked the mailing lists and the web a couple of
times. Below is my configuration file, the output, and
the config.log. I would appreciate any input into
this greatly.
Best wishes,
Art
I installed fftw3 with single precision and threads
Here are my configuration parameters
setenv MPICC 'mpicc'
setenv CC 'gcc'
setenv F77 'pgf77'
setenv CPPFLAGS '-I/users/aroberts/fftw3/include'
setenv LDFLAGS '-L/users/aroberts/fftw3/lib'
./configure --enable-mpi --program-suffix="_mpi"
--prefix=/users/aroberts/gromacs_3.3.1
--exec-prefix=/users/aroberts/gromacs_3.3.1
I run it and get the following error:
.
.checking for int... yes
checking size of int... configure: error: cannot
compute sizeof (int), 77
See `config.log' for more details.
***************
* config.log *
***************
This file contains any messages produced by compilers
while
running configure, to aid debugging if configure makes
a mistake.
It was created by GROMACS configure 3.3.1, which was
generated by GNU Autoconf 2.59. Invocation command
line was
$ ./configure --enable-mpi --program-suffix=_mpi
--prefix=/users/aroberts/gromacs_3.3.1
--exec-prefix=/users/aroberts/gromacs_3.3.1
## --------- ##
## Platform. ##
## --------- ##
hostname = ll02
uname -m = i686
uname -r = 2.4.18-14smp
uname -s = Linux
uname -v = #1 SMP Wed Sep 4 12:34:47 EDT 2002
/usr/bin/uname -p = unknown
/bin/uname -X = unknown
/bin/arch = i686
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /usr/local/pbs/bin
PATH: /usr/local/pgi/linux86/bin
PATH: /usr/local/nag/bin
PATH: /usr/local/intel/compiler/ia32/bin
PATH: /usr/local/tcltk/bin
PATH: /bin
PATH: /usr/bin
PATH: /usr/X11R6/bin
PATH: /usr/local/bin
PATH: /users/aroberts/bin
PATH: ./
PATH: /usr/parallel/mpich-gm.pgi/bin
PATH: /users/aroberts/bin
PATH: ./
## ----------- ##
## Core tests. ##
## ----------- ##
configure:1580: checking build system type
configure:1598: result: i686-pc-linux-gnu
configure:1606: checking host system type
configure:1620: result: i686-pc-linux-gnu
configure:1643: checking for a BSD-compatible install
configure:1698: result: /usr/bin/install -c
configure:1709: checking whether build environment is
sane
configure:1752: result: yes
configure:1817: checking for gawk
configure:1833: found /bin/gawk
configure:1843: result: gawk
configure:1853: checking whether make sets $(MAKE)
configure:1873: result: yes
configure:2036: checking how to create a ustar tar
archive
configure:2049: tar --version
tar (GNU tar) 1.13.25
Copyright (C) 2001 Free Software Foundation, Inc.
This program comes with NO WARRANTY, to the extent
permitted by law.
You may redistribute it under the terms of the GNU
General Public License;
see the file named COPYING for details.
Written by John Gilmore and Jay Fenlason.
configure:2052: $? = 0
configure:2092: tardir=conftest.dir && eval tar
--format=ustar -chf - "$tardir" >conftest.tar
tar: unrecognized option `--format=ustar'
Try `tar --help' for more information.
configure:2095: $? = 2
configure:2092: tardir=conftest.dir && eval pax -L -x
ustar -w "$tardir" >conftest.tar
configure:2095: $? = 0
configure:2099: pax -r <conftest.tar
configure:2102: $? = 0
configure:2115: result: pax
configure:2710: checking for C compiler version
configure:2713: gcc --version </dev/null >&5
gcc (GCC) 3.2 20020903 (Red Hat Linux 8.0 3.2-7)
Copyright (C) 2002 Free Software Foundation, Inc.
This is free software; see the source for copying
conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR
A PARTICULAR PURPOSE.
configure:2716: $? = 0
configure:2718: gcc -v </dev/null >&5
Reading specs from
/usr/lib/gcc-lib/i386-redhat-linux/3.2/specs
Configured with: ../configure --prefix=/usr
--mandir=/usr/share/man --infodir=/usr/share/info
--enable-shared --enable-threads=posix
--disable-checking --host=i386-redhat-linux
--with-system-zlib --enable-__cxa_atexit
Thread model: posix
gcc version 3.2 20020903 (Red Hat Linux 8.0 3.2-7)
configure:2721: $? = 0
configure:2723: gcc -V </dev/null >&5
gcc: argument to `-V' is missing
configure:2726: $? = 1
configure:2749: checking for C compiler default output
file name
configure:2752: gcc -I/users/aroberts/fftw3/include
-L/users/aroberts/fftw3/lib conftest.c
-L/users/aroberts/fftw3/lib -lfftw3 >&5
configure:2755: $? = 0
configure:2801: result: a.out
configure:2806: checking whether the C compiler works
configure:2812: ./a.out
configure:2815: $? = 0
configure:2832: result: yes
configure:2839: checking whether we are cross
compiling
configure:2841: result: no
configure:2844: checking for suffix of executables
configure:2846: gcc -o conftest
-I/users/aroberts/fftw3/include
-L/users/aroberts/fftw3/lib conftest.c
-L/users/aroberts/fftw3/lib -lfftw3 >&5
configure:2849: $? = 0
configure:2874: result:
configure:2880: checking for suffix of object files
configure:2901: gcc -c
-I/users/aroberts/fftw3/include conftest.c >&5
configure:2904: $? = 0
configure:2926: result: o
configure:2930: checking whether we are using the GNU
C compiler
configure:2954: gcc -c
-I/users/aroberts/fftw3/include conftest.c >&5
configure:2960: $? = 0
configure:2964: test -z
|| test ! -s conftest.err
configure:2967: $? = 0
configure:2970: test -s conftest.o
configure:2973: $? = 0
configure:2986: result: yes
configure:2992: checking whether gcc accepts -g
configure:3013: gcc -c -g
-I/users/aroberts/fftw3/include conftest.c >&5
configure:3019: $? = 0
configure:3023: test -z
|| test ! -s conftest.err
configure:3026: $? = 0
configure:3029: test -s conftest.o
configure:3032: $? = 0
configure:3043: result: yes
configure:3060: checking for gcc option to accept ANSI
C
configure:3130: gcc -c
-I/users/aroberts/fftw3/include conftest.c >&5
configure:3136: $? = 0
configure:3140: test -z
|| test ! -s conftest.err
configure:3143: $? = 0
configure:3146: test -s conftest.o
configure:3149: $? = 0
configure:3167: result: none needed
configure:3185: gcc -c
-I/users/aroberts/fftw3/include conftest.c >&5
conftest.c:2: parse error before "me"
configure:3191: $? = 1
configure: failed program was:
| #ifndef __cplusplus
| choke me
| #endif
configure:3335: checking for style of include used by
make
configure:3363: result: GNU
configure:3391: checking dependency style of gcc
configure:3481: result: gcc3
configure:3757: checking for mpxlc
configure:3783: result: mpicc
configure:3796: checking whether the MPI cc command
works
configure:3815: mpicc -o conftest
-I/users/aroberts/fftw3/include
-L/users/aroberts/fftw3/lib conftest.c
-L/users/aroberts/fftw3/lib -lfftw3 >&5
configure:3821: $? = 0
configure:3825: test -z
|| test ! -s conftest.err
configure:3828: $? = 0
configure:3831: test -s conftest
configure:3834: $? = 0
configure:3836: result: yes
configure:4720: checking how to run the C preprocessor
configure:4755: mpicc -E
-I/users/aroberts/fftw3/include conftest.c
configure:4761: $? = 0
configure:4793: mpicc -E
-I/users/aroberts/fftw3/include conftest.c
conftest.c:19:28: ac_nonexistent.h: No such file or
directory
configure:4799: $? = 1
configure: failed program was:
| /* confdefs.h. */
|
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.1"
| #define PACKAGE_STRING "GROMACS 3.3.1"
| #define PACKAGE_BUGREPORT "gmx-users at gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.1"
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Thu Nov 2 01:05:30 MST 2006"
| #define BUILD_USER "aroberts at ll02"
| #define BUILD_MACHINE "Linux 2.4.18-14smp i686"
| #define GMX_MPI
| #define F77_OR_C_FUNC(name,NAME) name
| #define F77_OR_C_FUNC_(name,NAME) name
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:4838: result: mpicc -E
configure:4862: mpicc -E
-I/users/aroberts/fftw3/include conftest.c
configure:4868: $? = 0
configure:4900: mpicc -E
-I/users/aroberts/fftw3/include conftest.c
conftest.c:19:28: ac_nonexistent.h: No such file or
directory
configure:4906: $? = 1
configure: failed program was:
| /* confdefs.h. */
|
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.1"
| #define PACKAGE_STRING "GROMACS 3.3.1"
| #define PACKAGE_BUGREPORT "gmx-users at gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.1"
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Thu Nov 2 01:05:30 MST 2006"
| #define BUILD_USER "aroberts at ll02"
| #define BUILD_MACHINE "Linux 2.4.18-14smp i686"
| #define GMX_MPI
| #define F77_OR_C_FUNC(name,NAME) name
| #define F77_OR_C_FUNC_(name,NAME) name
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:5337: checking whether mpicc accepts -O3
configure:5355: result: yes
configure:5379: checking whether mpicc accepts
-malign-double
configure:5397: result: yes
configure:5666: checking whether mpicc accepts
-funroll-all-loops
configure:5684: result: yes
configure:5832: checking whether byte ordering is
bigendian
configure:5867: mpicc -c
-I/users/aroberts/fftw3/include conftest.c >&5
configure:5873: $? = 0
configure:5877: test -z
|| test ! -s conftest.err
configure:5880: $? = 0
configure:5883: test -s conftest.o
configure:5886: $? = 0
configure:5918: mpicc -c
-I/users/aroberts/fftw3/include conftest.c >&5
conftest.c: In function `main':
conftest.c:34: `not' undeclared (first use in this
function)
conftest.c:34: (Each undeclared identifier is reported
only once
conftest.c:34: for each function it appears in.)
conftest.c:34: parse error before "big"
configure:5924: $? = 1
configure: failed program was:
| /* confdefs.h. */
|
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.1"
| #define PACKAGE_STRING "GROMACS 3.3.1"
| #define PACKAGE_BUGREPORT "gmx-users at gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.1"
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Thu Nov 2 01:05:30 MST 2006"
| #define BUILD_USER "aroberts at ll02"
| #define BUILD_MACHINE "Linux 2.4.18-14smp i686"
| #define GMX_MPI
| #define F77_OR_C_FUNC(name,NAME) name
| #define F77_OR_C_FUNC_(name,NAME) name
| /* end confdefs.h. */
| #include <sys/types.h>
| #include <sys/param.h>
|
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| int
| main ()
| {
| #if BYTE_ORDER != BIG_ENDIAN
| not big endian
| #endif
|
| ;
| return 0;
| }
configure:6067: result: no
configure:6091: checking for egrep
configure:6101: result: grep -E
configure:6106: checking for ANSI C header files
configure:6139: mpicc -c
-I/users/aroberts/fftw3/include conftest.c >&5
configure:6145: $? = 0
configure:6149: test -z
|| test ! -s conftest.err
configure:6152: $? = 0
configure:6155: test -s conftest.o
configure:6158: $? = 0
configure:6244: mpicc -o conftest
-I/users/aroberts/fftw3/include
-L/users/aroberts/fftw3/lib conftest.c
-L/users/aroberts/fftw3/lib -lfftw3 >&5
configure:6247: $? = 0
configure:6249: ./conftest
./conftest: error while loading shared libraries:
libgm.so.0: cannot open shared object file: No such
file or directory
configure:6252: $? = 127
configure: program exited with status 127
configure: failed program was:
| /* confdefs.h. */
|
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.1"
| #define PACKAGE_STRING "GROMACS 3.3.1"
| #define PACKAGE_BUGREPORT "gmx-users at gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.1"
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Thu Nov 2 01:05:30 MST 2006"
| #define BUILD_USER "aroberts at ll02"
| #define BUILD_MACHINE "Linux 2.4.18-14smp i686"
| #define GMX_MPI
| #define F77_OR_C_FUNC(name,NAME) name
| #define F77_OR_C_FUNC_(name,NAME) name
| /* end confdefs.h. */
| #include <ctype.h>
| #if ((' ' & 0x0FF) == 0x020)
| # define ISLOWER(c) ('a' <= (c) && (c) <= 'z')
| # define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a')
: (c))
| #else
| # define ISLOWER(c) (('a' <= (c) && (c) <= 'i')
|| ('j' <= (c) && (c) <= 'r') || ('s' <=
(c) && (c) <= 'z'))
| # define TOUPPER(c) (ISLOWER(c) ? ((c) | 0x40) :
(c))
| #endif
|
| #define XOR(e, f) (((e) && !(f)) || (!(e) && (f)))
| int
| main ()
| {
| int i;
| for (i = 0; i < 256; i++)
| if (XOR (islower (i), ISLOWER (i))
| || toupper (i) != TOUPPER (i))
| exit(2);
| exit (0);
| }
configure:6267: result: no
configure:6291: checking for sys/types.h
configure:6307: mpicc -c
-I/users/aroberts/fftw3/include conftest.c >&5
configure:6313: $? = 0
configure:6317: test -z
|| test ! -s conftest.err
configure:6320: $? = 0
configure:6323: test -s conftest.o
configure:6326: $? = 0
configure:6337: result: yes
configure:6291: checking for sys/stat.h
configure:6307: mpicc -c
-I/users/aroberts/fftw3/include conftest.c >&5
configure:6313: $? = 0
configure:6317: test -z
|| test ! -s conftest.err
configure:6320: $? = 0
configure:6323: test -s conftest.o
configure:6326: $? = 0
configure:6337: result: yes
configure:6291: checking for stdlib.h
configure:6307: mpicc -c
-I/users/aroberts/fftw3/include conftest.c >&5
configure:6313: $? = 0
configure:6317: test -z
|| test ! -s conftest.err
configure:6320: $? = 0
configure:6323: test -s conftest.o
configure:6326: $? = 0
configure:6337: result: yes
configure:6291: checking for string.h
configure:6307: mpicc -c
-I/users/aroberts/fftw3/include conftest.c >&5
configure:6313: $? = 0
configure:6317: test -z
|| test ! -s conftest.err
configure:6320: $? = 0
configure:6323: test -s conftest.o
configure:6326: $? = 0
configure:6337: result: yes
configure:6291: checking for memory.h
configure:6307: mpicc -c
-I/users/aroberts/fftw3/include conftest.c >&5
configure:6313: $? = 0
configure:6317: test -z
|| test ! -s conftest.err
configure:6320: $? = 0
configure:6323: test -s conftest.o
configure:6326: $? = 0
configure:6337: result: yes
configure:6291: checking for strings.h
configure:6307: mpicc -c
-I/users/aroberts/fftw3/include conftest.c >&5
configure:6313: $? = 0
configure:6317: test -z
|| test ! -s conftest.err
configure:6320: $? = 0
configure:6323: test -s conftest.o
configure:6326: $? = 0
configure:6337: result: yes
configure:6291: checking for inttypes.h
configure:6307: mpicc -c
-I/users/aroberts/fftw3/include conftest.c >&5
configure:6313: $? = 0
configure:6317: test -z
|| test ! -s conftest.err
configure:6320: $? = 0
configure:6323: test -s conftest.o
configure:6326: $? = 0
configure:6337: result: yes
configure:6291: checking for stdint.h
configure:6307: mpicc -c
-I/users/aroberts/fftw3/include conftest.c >&5
configure:6313: $? = 0
configure:6317: test -z
|| test ! -s conftest.err
configure:6320: $? = 0
configure:6323: test -s conftest.o
configure:6326: $? = 0
configure:6337: result: yes
configure:6291: checking for unistd.h
configure:6307: mpicc -c
-I/users/aroberts/fftw3/include conftest.c >&5
configure:6313: $? = 0
configure:6317: test -z
|| test ! -s conftest.err
configure:6320: $? = 0
configure:6323: test -s conftest.o
configure:6326: $? = 0
configure:6337: result: yes
configure:6349: checking for int
configure:6381: mpicc -c
-I/users/aroberts/fftw3/include conftest.c >&5
configure:6387: $? = 0
configure:6391: test -z
|| test ! -s conftest.err
configure:6394: $? = 0
configure:6397: test -s conftest.o
configure:6400: $? = 0
configure:6411: result: yes
configure:6414: checking size of int
configure:6781: mpicc -o conftest
-I/users/aroberts/fftw3/include
-L/users/aroberts/fftw3/lib conftest.c
-L/users/aroberts/fftw3/lib -lfftw3 >&5
configure:6784: $? = 0
configure:6786: ./conftest
./conftest: error while loading shared libraries:
libgm.so.0: cannot open shared object file: No such
file or directory
configure:6789: $? = 127
configure: program exited with status 127
configure: failed program was:
| /* confdefs.h. */
|
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.1"
| #define PACKAGE_STRING "GROMACS 3.3.1"
| #define PACKAGE_BUGREPORT "gmx-users at gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.1"
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Thu Nov 2 01:05:30 MST 2006"
| #define BUILD_USER "aroberts at ll02"
| #define BUILD_MACHINE "Linux 2.4.18-14smp i686"
| #define GMX_MPI
| #define F77_OR_C_FUNC(name,NAME) name
| #define F77_OR_C_FUNC_(name,NAME) name
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| /* end confdefs.h. */
| #include <stdio.h>
| #if HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #if HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #if STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # if HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #if HAVE_STRING_H
| # if !STDC_HEADERS && HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #if HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #if HAVE_INTTYPES_H
| # include <inttypes.h>
| #else
| # if HAVE_STDINT_H
| # include <stdint.h>
| # endif
| #endif
| #if HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| long longval () { return (long) (sizeof (int)); }
| unsigned long ulongval () { return (long) (sizeof
(int)); }
| #include <stdio.h>
| #include <stdlib.h>
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| int
| main ()
| {
|
| FILE *f = fopen ("conftest.val", "w");
| if (! f)
| exit (1);
| if (((long) (sizeof (int))) < 0)
| {
| long i = longval ();
| if (i != ((long) (sizeof (int))))
| exit (1);
| fprintf (f, "%ld\n", i);
| }
| else
| {
| unsigned long i = ulongval ();
| if (i != ((long) (sizeof (int))))
| exit (1);
| fprintf (f, "%lu\n", i);
| }
| exit (ferror (f) || fclose (f) != 0);
|
| ;
| return 0;
| }
configure:6799: error: cannot compute sizeof (int), 77
See `config.log' for more details.
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_build=i686-pc-linux-gnu
ac_cv_build_alias=i686-pc-linux-gnu
ac_cv_c_bigendian=no
ac_cv_c_compiler_gnu=yes
ac_cv_env_CC_set=set
ac_cv_env_CC_value=gcc
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=set
ac_cv_env_CPPFLAGS_value=-I/users/aroberts/fftw3/include
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_F77_set=set
ac_cv_env_F77_value=pgf77
ac_cv_env_FFLAGS_set=set
ac_cv_env_FFLAGS_value=
ac_cv_env_LDFLAGS_set=set
ac_cv_env_LDFLAGS_value=-L/users/aroberts/fftw3/lib
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_exeext=
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=no
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_host=i686-pc-linux-gnu
ac_cv_host_alias=i686-pc-linux-gnu
ac_cv_objext=o
ac_cv_path_install='/usr/bin/install -c'
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='mpicc -E'
ac_cv_prog_MPICC=mpicc
ac_cv_prog_cc_g=yes
ac_cv_prog_cc_stdc=
ac_cv_prog_egrep='grep -E'
ac_cv_prog_make_make_set=yes
ac_cv_type_int=yes
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_prog_tar_ustar=pax
## ----------------- ##
## Output variables. ##
## ----------------- ##
ACLOCAL='${SHELL}
/users/aroberts/gromacs-3.3.1/config/missing --run
aclocal-1.9'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='${SHELL}
/users/aroberts/gromacs-3.3.1/config/missing --run
tar'
AR=''
AS=''
ASFLAGS=''
AUTOCONF='${SHELL}
/users/aroberts/gromacs-3.3.1/config/missing --run
autoconf'
AUTOHEADER='${SHELL}
/users/aroberts/gromacs-3.3.1/config/missing --run
autoheader'
AUTOMAKE='${SHELL}
/users/aroberts/gromacs-3.3.1/config/missing --run
automake-1.9'
AWK='gawk'
CC='mpicc'
CCAS=''
CCASFLAGS=''
CCDEPMODE='depmode=gcc3'
CC_FOR_BUILD='gcc'
CFLAGS=''
CPP='mpicc -E'
CPPFLAGS='-I/users/aroberts/fftw3/include'
CXX=''
CXXCPP=''
CXXDEPMODE=''
CXXFLAGS=''
CYGPATH_W='echo'
DEFS=''
DEPDIR='.deps'
DLLTOOL=''
ECHO='echo'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='grep -E'
EXEEXT=''
F77='pgf77'
F77LINK='$(LINK)'
FFLAGS=''
FLIBS=''
GMXANA_LIBOBJS=''
GMXLIB_LIBOBJS=''
GMX_DOUBLE_FALSE=''
GMX_DOUBLE_TRUE='#'
GMX_EXTERNAL_BLAS_FALSE=''
GMX_EXTERNAL_BLAS_TRUE='#'
GMX_EXTERNAL_LAPACK_FALSE=''
GMX_EXTERNAL_LAPACK_TRUE='#'
GMX_FORTRAN_FALSE=''
GMX_FORTRAN_TRUE='#'
GMX_IA32_3DNOW_FALSE=''
GMX_IA32_3DNOW_TRUE=''
GMX_IA32_SSE2_FALSE=''
GMX_IA32_SSE2_TRUE=''
GMX_IA32_SSE_FALSE=''
GMX_IA32_SSE_TRUE=''
GMX_IA64_ASM_DOUBLE_FALSE=''
GMX_IA64_ASM_DOUBLE_TRUE=''
GMX_IA64_ASM_SINGLE_FALSE=''
GMX_IA64_ASM_SINGLE_TRUE=''
GMX_PPC_ALTIVEC_FALSE=''
GMX_PPC_ALTIVEC_TRUE=''
GMX_PREFETCH_FORCES_FALSE=''
GMX_PREFETCH_FORCES_TRUE='#'
GMX_SOFTWARE_SQRT_FALSE='#'
GMX_SOFTWARE_SQRT_TRUE=''
GMX_THREAD_FALSE=''
GMX_THREAD_TRUE='#'
GMX_X86_64_SSE2_FALSE=''
GMX_X86_64_SSE2_TRUE=''
GMX_X86_64_SSE_FALSE=''
GMX_X86_64_SSE_TRUE=''
INCLUDES=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='${SHELL} $(install_sh) -c -s'
LDFLAGS='-L/users/aroberts/fftw3/lib'
LIBOBJS=''
LIBS='-L/users/aroberts/fftw3/lib -lfftw3'
LIBSUFFIX=''
LIBTOOL=''
LN_S=''
LTLIBOBJS=''
MAKEINFO='${SHELL}
/users/aroberts/gromacs-3.3.1/config/missing --run
makeinfo'
MDLIB_LIBOBJS=' qm_gaussian.lo'
MPICC='mpicc'
OBJDUMP=''
OBJEXT='o'
PACKAGE='gromacs'
PACKAGE_BUGREPORT='gmx-users at gromacs.org'
PACKAGE_NAME='GROMACS'
PACKAGE_STRING='GROMACS 3.3.1'
PACKAGE_TARNAME='gromacs'
PACKAGE_VERSION='3.3.1'
PATH_SEPARATOR=':'
RANLIB=''
RPM=''
SET_MAKE=''
SHARED_VERSION_INFO='4:0:0'
SHELL='/bin/sh'
STRIP=''
USE_X11_FALSE=''
USE_X11_TRUE=''
VERSION='3.3.1'
X_CFLAGS=''
X_EXTRA_LIBS=''
X_LIBS=''
X_PRE_LIBS=''
ac_ct_AR=''
ac_ct_AS=''
ac_ct_CC=''
ac_ct_CXX=''
ac_ct_DLLTOOL=''
ac_ct_F77=''
ac_ct_OBJDUMP=''
ac_ct_RANLIB=''
ac_ct_STRIP=''
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE=''
am__fastdepCXX_TRUE=''
am__include='include'
am__leading_dot='.'
am__quote=''
am__tar='pax -L -x ustar -w "$$tardir"'
am__untar='pax -r'
bindir='${exec_prefix}/bin'
build='i686-pc-linux-gnu'
build_alias=''
build_cpu='i686'
build_os='linux-gnu'
build_vendor='pc'
datadir='${prefix}/share'
exec_prefix='/users/aroberts/gromacs_3.3.1'
host='i686-pc-linux-gnu'
host_alias=''
host_cpu='i686'
host_os='linux-gnu'
host_vendor='pc'
includedir='${prefix}/include'
infodir='${prefix}/info'
install_sh='/users/aroberts/gromacs-3.3.1/config/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localstatedir='${prefix}/var'
mandir='${prefix}/man'
mkdir_p='mkdir -p --'
oldincludedir='/usr/include'
prefix='/users/aroberts/gromacs_3.3.1'
program_transform_name='s,$$,_mpi,'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
#define BUILD_MACHINE "Linux 2.4.18-14smp i686"
#define BUILD_TIME "Thu Nov 2 01:05:30 MST 2006"
#define BUILD_USER "aroberts at ll02"
#define F77_OR_C_FUNC(name,NAME) name
#define F77_OR_C_FUNC_(name,NAME) name
#define GMX_MPI
#define GMX_QMMM_GAUSSIAN
#define GMX_SOFTWARE_SQRT
#define HAVE_INTTYPES_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STDINT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRINGS_H 1
#define HAVE_STRING_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_UNISTD_H 1
#define PACKAGE "gromacs"
#define PACKAGE_BUGREPORT "gmx-users at gromacs.org"
#define PACKAGE_NAME "GROMACS"
#define PACKAGE_STRING "GROMACS 3.3.1"
#define PACKAGE_TARNAME "gromacs"
#define PACKAGE_VERSION "3.3.1"
#define VERSION "3.3.1"
configure: exit 1
.
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