[gmx-users] Problems Installing on IBM Netfinity 4500R with Redhat 8.0
Carsten Kutzner
ckutzne at gwdg.de
Thu Nov 2 09:24:28 CET 2006
Hi Arthur,
the problem is the following:
>./conftest: error while loading shared libraries:
> libgm.so.0: cannot open shared object file: No such
> file or directory
Make shure libgm.so.0 can be found somewhere.
Hope that helps,
Carsten
Arthur Roberts wrote:
> Hi, all,
>
> I am attempting to compile Gromacs 3.3.1 on a 256 node
> IBM Netfinity 4500R with Redhat 8.0. I already
> checked the mailing lists and the web a couple of
> times. Below is my configuration file, the output, and
> the config.log. I would appreciate any input into
> this greatly.
>
> Best wishes,
> Art
>
> I installed fftw3 with single precision and threads
>
> Here are my configuration parameters
>
> setenv MPICC 'mpicc'
> setenv CC 'gcc'
> setenv F77 'pgf77'
> setenv CPPFLAGS '-I/users/aroberts/fftw3/include'
> setenv LDFLAGS '-L/users/aroberts/fftw3/lib'
> ./configure --enable-mpi --program-suffix="_mpi"
> --prefix=/users/aroberts/gromacs_3.3.1
> --exec-prefix=/users/aroberts/gromacs_3.3.1
>
> I run it and get the following error:
> .
> .checking for int... yes
> checking size of int... configure: error: cannot
> compute sizeof (int), 77
> See `config.log' for more details.
>
> ***************
> * config.log *
> ***************
> This file contains any messages produced by compilers
> while
> running configure, to aid debugging if configure makes
> a mistake.
>
> It was created by GROMACS configure 3.3.1, which was
> generated by GNU Autoconf 2.59. Invocation command
> line was
>
> $ ./configure --enable-mpi --program-suffix=_mpi
> --prefix=/users/aroberts/gromacs_3.3.1
> --exec-prefix=/users/aroberts/gromacs_3.3.1
>
> ## --------- ##
> ## Platform. ##
> ## --------- ##
>
> hostname = ll02
> uname -m = i686
> uname -r = 2.4.18-14smp
> uname -s = Linux
> uname -v = #1 SMP Wed Sep 4 12:34:47 EDT 2002
>
> /usr/bin/uname -p = unknown
> /bin/uname -X = unknown
>
> /bin/arch = i686
> /usr/bin/arch -k = unknown
> /usr/convex/getsysinfo = unknown
> hostinfo = unknown
> /bin/machine = unknown
> /usr/bin/oslevel = unknown
> /bin/universe = unknown
>
> PATH: /usr/local/pbs/bin
> PATH: /usr/local/pgi/linux86/bin
> PATH: /usr/local/nag/bin
> PATH: /usr/local/intel/compiler/ia32/bin
> PATH: /usr/local/tcltk/bin
> PATH: /bin
> PATH: /usr/bin
> PATH: /usr/X11R6/bin
> PATH: /usr/local/bin
> PATH: /users/aroberts/bin
> PATH: ./
> PATH: /usr/parallel/mpich-gm.pgi/bin
> PATH: /users/aroberts/bin
> PATH: ./
>
>
> ## ----------- ##
> ## Core tests. ##
> ## ----------- ##
>
> configure:1580: checking build system type
> configure:1598: result: i686-pc-linux-gnu
> configure:1606: checking host system type
> configure:1620: result: i686-pc-linux-gnu
> configure:1643: checking for a BSD-compatible install
> configure:1698: result: /usr/bin/install -c
> configure:1709: checking whether build environment is
> sane
> configure:1752: result: yes
> configure:1817: checking for gawk
> configure:1833: found /bin/gawk
> configure:1843: result: gawk
> configure:1853: checking whether make sets $(MAKE)
> configure:1873: result: yes
> configure:2036: checking how to create a ustar tar
> archive
> configure:2049: tar --version
> tar (GNU tar) 1.13.25
> Copyright (C) 2001 Free Software Foundation, Inc.
> This program comes with NO WARRANTY, to the extent
> permitted by law.
> You may redistribute it under the terms of the GNU
> General Public License;
> see the file named COPYING for details.
> Written by John Gilmore and Jay Fenlason.
> configure:2052: $? = 0
> configure:2092: tardir=conftest.dir && eval tar
> --format=ustar -chf - "$tardir" >conftest.tar
> tar: unrecognized option `--format=ustar'
> Try `tar --help' for more information.
> configure:2095: $? = 2
> configure:2092: tardir=conftest.dir && eval pax -L -x
> ustar -w "$tardir" >conftest.tar
> configure:2095: $? = 0
> configure:2099: pax -r <conftest.tar
> configure:2102: $? = 0
> configure:2115: result: pax
> configure:2710: checking for C compiler version
> configure:2713: gcc --version </dev/null >&5
> gcc (GCC) 3.2 20020903 (Red Hat Linux 8.0 3.2-7)
> Copyright (C) 2002 Free Software Foundation, Inc.
> This is free software; see the source for copying
> conditions. There is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR
> A PARTICULAR PURPOSE.
>
> configure:2716: $? = 0
> configure:2718: gcc -v </dev/null >&5
> Reading specs from
> /usr/lib/gcc-lib/i386-redhat-linux/3.2/specs
> Configured with: ../configure --prefix=/usr
> --mandir=/usr/share/man --infodir=/usr/share/info
> --enable-shared --enable-threads=posix
> --disable-checking --host=i386-redhat-linux
> --with-system-zlib --enable-__cxa_atexit
> Thread model: posix
> gcc version 3.2 20020903 (Red Hat Linux 8.0 3.2-7)
> configure:2721: $? = 0
> configure:2723: gcc -V </dev/null >&5
> gcc: argument to `-V' is missing
> configure:2726: $? = 1
> configure:2749: checking for C compiler default output
> file name
> configure:2752: gcc -I/users/aroberts/fftw3/include
> -L/users/aroberts/fftw3/lib conftest.c
> -L/users/aroberts/fftw3/lib -lfftw3 >&5
> configure:2755: $? = 0
> configure:2801: result: a.out
> configure:2806: checking whether the C compiler works
> configure:2812: ./a.out
> configure:2815: $? = 0
> configure:2832: result: yes
> configure:2839: checking whether we are cross
> compiling
> configure:2841: result: no
> configure:2844: checking for suffix of executables
> configure:2846: gcc -o conftest
> -I/users/aroberts/fftw3/include
> -L/users/aroberts/fftw3/lib conftest.c
> -L/users/aroberts/fftw3/lib -lfftw3 >&5
> configure:2849: $? = 0
> configure:2874: result:
> configure:2880: checking for suffix of object files
> configure:2901: gcc -c
> -I/users/aroberts/fftw3/include conftest.c >&5
> configure:2904: $? = 0
> configure:2926: result: o
> configure:2930: checking whether we are using the GNU
> C compiler
> configure:2954: gcc -c
> -I/users/aroberts/fftw3/include conftest.c >&5
> configure:2960: $? = 0
> configure:2964: test -z
> || test ! -s conftest.err
> configure:2967: $? = 0
> configure:2970: test -s conftest.o
> configure:2973: $? = 0
> configure:2986: result: yes
> configure:2992: checking whether gcc accepts -g
> configure:3013: gcc -c -g
> -I/users/aroberts/fftw3/include conftest.c >&5
> configure:3019: $? = 0
> configure:3023: test -z
> || test ! -s conftest.err
> configure:3026: $? = 0
> configure:3029: test -s conftest.o
> configure:3032: $? = 0
> configure:3043: result: yes
> configure:3060: checking for gcc option to accept ANSI
> C
> configure:3130: gcc -c
> -I/users/aroberts/fftw3/include conftest.c >&5
> configure:3136: $? = 0
> configure:3140: test -z
> || test ! -s conftest.err
> configure:3143: $? = 0
> configure:3146: test -s conftest.o
> configure:3149: $? = 0
> configure:3167: result: none needed
> configure:3185: gcc -c
> -I/users/aroberts/fftw3/include conftest.c >&5
> conftest.c:2: parse error before "me"
> configure:3191: $? = 1
> configure: failed program was:
> | #ifndef __cplusplus
> | choke me
> | #endif
> configure:3335: checking for style of include used by
> make
> configure:3363: result: GNU
> configure:3391: checking dependency style of gcc
> configure:3481: result: gcc3
> configure:3757: checking for mpxlc
> configure:3783: result: mpicc
> configure:3796: checking whether the MPI cc command
> works
> configure:3815: mpicc -o conftest
> -I/users/aroberts/fftw3/include
> -L/users/aroberts/fftw3/lib conftest.c
> -L/users/aroberts/fftw3/lib -lfftw3 >&5
> configure:3821: $? = 0
> configure:3825: test -z
> || test ! -s conftest.err
> configure:3828: $? = 0
> configure:3831: test -s conftest
> configure:3834: $? = 0
> configure:3836: result: yes
> configure:4720: checking how to run the C preprocessor
> configure:4755: mpicc -E
> -I/users/aroberts/fftw3/include conftest.c
> configure:4761: $? = 0
> configure:4793: mpicc -E
> -I/users/aroberts/fftw3/include conftest.c
> conftest.c:19:28: ac_nonexistent.h: No such file or
> directory
> configure:4799: $? = 1
> configure: failed program was:
> | /* confdefs.h. */
> |
> | #define PACKAGE_NAME "GROMACS"
> | #define PACKAGE_TARNAME "gromacs"
> | #define PACKAGE_VERSION "3.3.1"
> | #define PACKAGE_STRING "GROMACS 3.3.1"
> | #define PACKAGE_BUGREPORT "gmx-users at gromacs.org"
> | #define PACKAGE "gromacs"
> | #define VERSION "3.3.1"
> | #define GMX_SOFTWARE_SQRT
> | #define GMX_QMMM_GAUSSIAN
> | #define BUILD_TIME "Thu Nov 2 01:05:30 MST 2006"
> | #define BUILD_USER "aroberts at ll02"
> | #define BUILD_MACHINE "Linux 2.4.18-14smp i686"
> | #define GMX_MPI
> | #define F77_OR_C_FUNC(name,NAME) name
> | #define F77_OR_C_FUNC_(name,NAME) name
> | /* end confdefs.h. */
> | #include <ac_nonexistent.h>
> configure:4838: result: mpicc -E
> configure:4862: mpicc -E
> -I/users/aroberts/fftw3/include conftest.c
> configure:4868: $? = 0
> configure:4900: mpicc -E
> -I/users/aroberts/fftw3/include conftest.c
> conftest.c:19:28: ac_nonexistent.h: No such file or
> directory
> configure:4906: $? = 1
> configure: failed program was:
> | /* confdefs.h. */
> |
> | #define PACKAGE_NAME "GROMACS"
> | #define PACKAGE_TARNAME "gromacs"
> | #define PACKAGE_VERSION "3.3.1"
> | #define PACKAGE_STRING "GROMACS 3.3.1"
> | #define PACKAGE_BUGREPORT "gmx-users at gromacs.org"
> | #define PACKAGE "gromacs"
> | #define VERSION "3.3.1"
> | #define GMX_SOFTWARE_SQRT
> | #define GMX_QMMM_GAUSSIAN
> | #define BUILD_TIME "Thu Nov 2 01:05:30 MST 2006"
> | #define BUILD_USER "aroberts at ll02"
> | #define BUILD_MACHINE "Linux 2.4.18-14smp i686"
> | #define GMX_MPI
> | #define F77_OR_C_FUNC(name,NAME) name
> | #define F77_OR_C_FUNC_(name,NAME) name
> | /* end confdefs.h. */
> | #include <ac_nonexistent.h>
> configure:5337: checking whether mpicc accepts -O3
> configure:5355: result: yes
> configure:5379: checking whether mpicc accepts
> -malign-double
> configure:5397: result: yes
> configure:5666: checking whether mpicc accepts
> -funroll-all-loops
> configure:5684: result: yes
> configure:5832: checking whether byte ordering is
> bigendian
> configure:5867: mpicc -c
> -I/users/aroberts/fftw3/include conftest.c >&5
> configure:5873: $? = 0
> configure:5877: test -z
> || test ! -s conftest.err
> configure:5880: $? = 0
> configure:5883: test -s conftest.o
> configure:5886: $? = 0
> configure:5918: mpicc -c
> -I/users/aroberts/fftw3/include conftest.c >&5
> conftest.c: In function `main':
> conftest.c:34: `not' undeclared (first use in this
> function)
> conftest.c:34: (Each undeclared identifier is reported
> only once
> conftest.c:34: for each function it appears in.)
> conftest.c:34: parse error before "big"
> configure:5924: $? = 1
> configure: failed program was:
> | /* confdefs.h. */
> |
> | #define PACKAGE_NAME "GROMACS"
> | #define PACKAGE_TARNAME "gromacs"
> | #define PACKAGE_VERSION "3.3.1"
> | #define PACKAGE_STRING "GROMACS 3.3.1"
> | #define PACKAGE_BUGREPORT "gmx-users at gromacs.org"
> | #define PACKAGE "gromacs"
> | #define VERSION "3.3.1"
> | #define GMX_SOFTWARE_SQRT
> | #define GMX_QMMM_GAUSSIAN
> | #define BUILD_TIME "Thu Nov 2 01:05:30 MST 2006"
> | #define BUILD_USER "aroberts at ll02"
> | #define BUILD_MACHINE "Linux 2.4.18-14smp i686"
> | #define GMX_MPI
> | #define F77_OR_C_FUNC(name,NAME) name
> | #define F77_OR_C_FUNC_(name,NAME) name
> | /* end confdefs.h. */
> | #include <sys/types.h>
> | #include <sys/param.h>
> |
> | #ifdef F77_DUMMY_MAIN
> |
> | # ifdef __cplusplus
> | extern "C"
> | # endif
> | int F77_DUMMY_MAIN() { return 1; }
> |
> | #endif
> | int
> | main ()
> | {
> | #if BYTE_ORDER != BIG_ENDIAN
> | not big endian
> | #endif
> |
> | ;
> | return 0;
> | }
> configure:6067: result: no
> configure:6091: checking for egrep
> configure:6101: result: grep -E
> configure:6106: checking for ANSI C header files
> configure:6139: mpicc -c
> -I/users/aroberts/fftw3/include conftest.c >&5
> configure:6145: $? = 0
> configure:6149: test -z
> || test ! -s conftest.err
> configure:6152: $? = 0
> configure:6155: test -s conftest.o
> configure:6158: $? = 0
> configure:6244: mpicc -o conftest
> -I/users/aroberts/fftw3/include
> -L/users/aroberts/fftw3/lib conftest.c
> -L/users/aroberts/fftw3/lib -lfftw3 >&5
> configure:6247: $? = 0
> configure:6249: ./conftest
> ./conftest: error while loading shared libraries:
> libgm.so.0: cannot open shared object file: No such
> file or directory
> configure:6252: $? = 127
> configure: program exited with status 127
> configure: failed program was:
> | /* confdefs.h. */
> |
> | #define PACKAGE_NAME "GROMACS"
> | #define PACKAGE_TARNAME "gromacs"
> | #define PACKAGE_VERSION "3.3.1"
> | #define PACKAGE_STRING "GROMACS 3.3.1"
> | #define PACKAGE_BUGREPORT "gmx-users at gromacs.org"
> | #define PACKAGE "gromacs"
> | #define VERSION "3.3.1"
> | #define GMX_SOFTWARE_SQRT
> | #define GMX_QMMM_GAUSSIAN
> | #define BUILD_TIME "Thu Nov 2 01:05:30 MST 2006"
> | #define BUILD_USER "aroberts at ll02"
> | #define BUILD_MACHINE "Linux 2.4.18-14smp i686"
> | #define GMX_MPI
> | #define F77_OR_C_FUNC(name,NAME) name
> | #define F77_OR_C_FUNC_(name,NAME) name
> | /* end confdefs.h. */
> | #include <ctype.h>
> | #if ((' ' & 0x0FF) == 0x020)
> | # define ISLOWER(c) ('a' <= (c) && (c) <= 'z')
> | # define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a')
> : (c))
> | #else
> | # define ISLOWER(c) (('a' <= (c) && (c) <= 'i')
> || ('j' <= (c) && (c) <= 'r') || ('s' <=
> (c) && (c) <= 'z'))
> | # define TOUPPER(c) (ISLOWER(c) ? ((c) | 0x40) :
> (c))
> | #endif
> |
> | #define XOR(e, f) (((e) && !(f)) || (!(e) && (f)))
> | int
> | main ()
> | {
> | int i;
> | for (i = 0; i < 256; i++)
> | if (XOR (islower (i), ISLOWER (i))
> | || toupper (i) != TOUPPER (i))
> | exit(2);
> | exit (0);
> | }
> configure:6267: result: no
> configure:6291: checking for sys/types.h
> configure:6307: mpicc -c
> -I/users/aroberts/fftw3/include conftest.c >&5
> configure:6313: $? = 0
> configure:6317: test -z
> || test ! -s conftest.err
> configure:6320: $? = 0
> configure:6323: test -s conftest.o
> configure:6326: $? = 0
> configure:6337: result: yes
> configure:6291: checking for sys/stat.h
> configure:6307: mpicc -c
> -I/users/aroberts/fftw3/include conftest.c >&5
> configure:6313: $? = 0
> configure:6317: test -z
> || test ! -s conftest.err
> configure:6320: $? = 0
> configure:6323: test -s conftest.o
> configure:6326: $? = 0
> configure:6337: result: yes
> configure:6291: checking for stdlib.h
> configure:6307: mpicc -c
> -I/users/aroberts/fftw3/include conftest.c >&5
> configure:6313: $? = 0
> configure:6317: test -z
> || test ! -s conftest.err
> configure:6320: $? = 0
> configure:6323: test -s conftest.o
> configure:6326: $? = 0
> configure:6337: result: yes
> configure:6291: checking for string.h
> configure:6307: mpicc -c
> -I/users/aroberts/fftw3/include conftest.c >&5
> configure:6313: $? = 0
> configure:6317: test -z
> || test ! -s conftest.err
> configure:6320: $? = 0
> configure:6323: test -s conftest.o
> configure:6326: $? = 0
> configure:6337: result: yes
> configure:6291: checking for memory.h
> configure:6307: mpicc -c
> -I/users/aroberts/fftw3/include conftest.c >&5
> configure:6313: $? = 0
> configure:6317: test -z
> || test ! -s conftest.err
> configure:6320: $? = 0
> configure:6323: test -s conftest.o
> configure:6326: $? = 0
> configure:6337: result: yes
> configure:6291: checking for strings.h
> configure:6307: mpicc -c
> -I/users/aroberts/fftw3/include conftest.c >&5
> configure:6313: $? = 0
> configure:6317: test -z
> || test ! -s conftest.err
> configure:6320: $? = 0
> configure:6323: test -s conftest.o
> configure:6326: $? = 0
> configure:6337: result: yes
> configure:6291: checking for inttypes.h
> configure:6307: mpicc -c
> -I/users/aroberts/fftw3/include conftest.c >&5
> configure:6313: $? = 0
> configure:6317: test -z
> || test ! -s conftest.err
> configure:6320: $? = 0
> configure:6323: test -s conftest.o
> configure:6326: $? = 0
> configure:6337: result: yes
> configure:6291: checking for stdint.h
> configure:6307: mpicc -c
> -I/users/aroberts/fftw3/include conftest.c >&5
> configure:6313: $? = 0
> configure:6317: test -z
> || test ! -s conftest.err
> configure:6320: $? = 0
> configure:6323: test -s conftest.o
> configure:6326: $? = 0
> configure:6337: result: yes
> configure:6291: checking for unistd.h
> configure:6307: mpicc -c
> -I/users/aroberts/fftw3/include conftest.c >&5
> configure:6313: $? = 0
> configure:6317: test -z
> || test ! -s conftest.err
> configure:6320: $? = 0
> configure:6323: test -s conftest.o
> configure:6326: $? = 0
> configure:6337: result: yes
> configure:6349: checking for int
> configure:6381: mpicc -c
> -I/users/aroberts/fftw3/include conftest.c >&5
> configure:6387: $? = 0
> configure:6391: test -z
> || test ! -s conftest.err
> configure:6394: $? = 0
> configure:6397: test -s conftest.o
> configure:6400: $? = 0
> configure:6411: result: yes
> configure:6414: checking size of int
> configure:6781: mpicc -o conftest
> -I/users/aroberts/fftw3/include
> -L/users/aroberts/fftw3/lib conftest.c
> -L/users/aroberts/fftw3/lib -lfftw3 >&5
> configure:6784: $? = 0
> configure:6786: ./conftest
> ./conftest: error while loading shared libraries:
> libgm.so.0: cannot open shared object file: No such
> file or directory
> configure:6789: $? = 127
> configure: program exited with status 127
> configure: failed program was:
> | /* confdefs.h. */
> |
> | #define PACKAGE_NAME "GROMACS"
> | #define PACKAGE_TARNAME "gromacs"
> | #define PACKAGE_VERSION "3.3.1"
> | #define PACKAGE_STRING "GROMACS 3.3.1"
> | #define PACKAGE_BUGREPORT "gmx-users at gromacs.org"
> | #define PACKAGE "gromacs"
> | #define VERSION "3.3.1"
> | #define GMX_SOFTWARE_SQRT
> | #define GMX_QMMM_GAUSSIAN
> | #define BUILD_TIME "Thu Nov 2 01:05:30 MST 2006"
> | #define BUILD_USER "aroberts at ll02"
> | #define BUILD_MACHINE "Linux 2.4.18-14smp i686"
> | #define GMX_MPI
> | #define F77_OR_C_FUNC(name,NAME) name
> | #define F77_OR_C_FUNC_(name,NAME) name
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | /* end confdefs.h. */
> | #include <stdio.h>
> | #if HAVE_SYS_TYPES_H
> | # include <sys/types.h>
> | #endif
> | #if HAVE_SYS_STAT_H
> | # include <sys/stat.h>
> | #endif
> | #if STDC_HEADERS
> | # include <stdlib.h>
> | # include <stddef.h>
> | #else
> | # if HAVE_STDLIB_H
> | # include <stdlib.h>
> | # endif
> | #endif
> | #if HAVE_STRING_H
> | # if !STDC_HEADERS && HAVE_MEMORY_H
> | # include <memory.h>
> | # endif
> | # include <string.h>
> | #endif
> | #if HAVE_STRINGS_H
> | # include <strings.h>
> | #endif
> | #if HAVE_INTTYPES_H
> | # include <inttypes.h>
> | #else
> | # if HAVE_STDINT_H
> | # include <stdint.h>
> | # endif
> | #endif
> | #if HAVE_UNISTD_H
> | # include <unistd.h>
> | #endif
> | long longval () { return (long) (sizeof (int)); }
> | unsigned long ulongval () { return (long) (sizeof
> (int)); }
> | #include <stdio.h>
> | #include <stdlib.h>
> | #ifdef F77_DUMMY_MAIN
> |
> | # ifdef __cplusplus
> | extern "C"
> | # endif
> | int F77_DUMMY_MAIN() { return 1; }
> |
> | #endif
> | int
> | main ()
> | {
> |
> | FILE *f = fopen ("conftest.val", "w");
> | if (! f)
> | exit (1);
> | if (((long) (sizeof (int))) < 0)
> | {
> | long i = longval ();
> | if (i != ((long) (sizeof (int))))
> | exit (1);
> | fprintf (f, "%ld\n", i);
> | }
> | else
> | {
> | unsigned long i = ulongval ();
> | if (i != ((long) (sizeof (int))))
> | exit (1);
> | fprintf (f, "%lu\n", i);
> | }
> | exit (ferror (f) || fclose (f) != 0);
> |
> | ;
> | return 0;
> | }
> configure:6799: error: cannot compute sizeof (int), 77
> See `config.log' for more details.
>
> ## ---------------- ##
> ## Cache variables. ##
> ## ---------------- ##
>
> ac_cv_build=i686-pc-linux-gnu
> ac_cv_build_alias=i686-pc-linux-gnu
> ac_cv_c_bigendian=no
> ac_cv_c_compiler_gnu=yes
> ac_cv_env_CC_set=set
> ac_cv_env_CC_value=gcc
> ac_cv_env_CFLAGS_set=set
> ac_cv_env_CFLAGS_value=
> ac_cv_env_CPPFLAGS_set=set
> ac_cv_env_CPPFLAGS_value=-I/users/aroberts/fftw3/include
> ac_cv_env_CPP_set=
> ac_cv_env_CPP_value=
> ac_cv_env_CXXCPP_set=
> ac_cv_env_CXXCPP_value=
> ac_cv_env_CXXFLAGS_set=
> ac_cv_env_CXXFLAGS_value=
> ac_cv_env_CXX_set=
> ac_cv_env_CXX_value=
> ac_cv_env_F77_set=set
> ac_cv_env_F77_value=pgf77
> ac_cv_env_FFLAGS_set=set
> ac_cv_env_FFLAGS_value=
> ac_cv_env_LDFLAGS_set=set
> ac_cv_env_LDFLAGS_value=-L/users/aroberts/fftw3/lib
> ac_cv_env_build_alias_set=
> ac_cv_env_build_alias_value=
> ac_cv_env_host_alias_set=
> ac_cv_env_host_alias_value=
> ac_cv_env_target_alias_set=
> ac_cv_env_target_alias_value=
> ac_cv_exeext=
> ac_cv_header_inttypes_h=yes
> ac_cv_header_memory_h=yes
> ac_cv_header_stdc=no
> ac_cv_header_stdint_h=yes
> ac_cv_header_stdlib_h=yes
> ac_cv_header_string_h=yes
> ac_cv_header_strings_h=yes
> ac_cv_header_sys_stat_h=yes
> ac_cv_header_sys_types_h=yes
> ac_cv_header_unistd_h=yes
> ac_cv_host=i686-pc-linux-gnu
> ac_cv_host_alias=i686-pc-linux-gnu
> ac_cv_objext=o
> ac_cv_path_install='/usr/bin/install -c'
> ac_cv_prog_AWK=gawk
> ac_cv_prog_CPP='mpicc -E'
> ac_cv_prog_MPICC=mpicc
> ac_cv_prog_cc_g=yes
> ac_cv_prog_cc_stdc=
> ac_cv_prog_egrep='grep -E'
> ac_cv_prog_make_make_set=yes
> ac_cv_type_int=yes
> am_cv_CC_dependencies_compiler_type=gcc3
> am_cv_prog_tar_ustar=pax
>
> ## ----------------- ##
> ## Output variables. ##
> ## ----------------- ##
>
> ACLOCAL='${SHELL}
> /users/aroberts/gromacs-3.3.1/config/missing --run
> aclocal-1.9'
> AMDEPBACKSLASH='\'
> AMDEP_FALSE='#'
> AMDEP_TRUE=''
> AMTAR='${SHELL}
> /users/aroberts/gromacs-3.3.1/config/missing --run
> tar'
> AR=''
> AS=''
> ASFLAGS=''
> AUTOCONF='${SHELL}
> /users/aroberts/gromacs-3.3.1/config/missing --run
> autoconf'
> AUTOHEADER='${SHELL}
> /users/aroberts/gromacs-3.3.1/config/missing --run
> autoheader'
> AUTOMAKE='${SHELL}
> /users/aroberts/gromacs-3.3.1/config/missing --run
> automake-1.9'
> AWK='gawk'
> CC='mpicc'
> CCAS=''
> CCASFLAGS=''
> CCDEPMODE='depmode=gcc3'
> CC_FOR_BUILD='gcc'
> CFLAGS=''
> CPP='mpicc -E'
> CPPFLAGS='-I/users/aroberts/fftw3/include'
> CXX=''
> CXXCPP=''
> CXXDEPMODE=''
> CXXFLAGS=''
> CYGPATH_W='echo'
> DEFS=''
> DEPDIR='.deps'
> DLLTOOL=''
> ECHO='echo'
> ECHO_C=''
> ECHO_N='-n'
> ECHO_T=''
> EGREP='grep -E'
> EXEEXT=''
> F77='pgf77'
> F77LINK='$(LINK)'
> FFLAGS=''
> FLIBS=''
> GMXANA_LIBOBJS=''
> GMXLIB_LIBOBJS=''
> GMX_DOUBLE_FALSE=''
> GMX_DOUBLE_TRUE='#'
> GMX_EXTERNAL_BLAS_FALSE=''
> GMX_EXTERNAL_BLAS_TRUE='#'
> GMX_EXTERNAL_LAPACK_FALSE=''
> GMX_EXTERNAL_LAPACK_TRUE='#'
> GMX_FORTRAN_FALSE=''
> GMX_FORTRAN_TRUE='#'
> GMX_IA32_3DNOW_FALSE=''
> GMX_IA32_3DNOW_TRUE=''
> GMX_IA32_SSE2_FALSE=''
> GMX_IA32_SSE2_TRUE=''
> GMX_IA32_SSE_FALSE=''
> GMX_IA32_SSE_TRUE=''
> GMX_IA64_ASM_DOUBLE_FALSE=''
> GMX_IA64_ASM_DOUBLE_TRUE=''
> GMX_IA64_ASM_SINGLE_FALSE=''
> GMX_IA64_ASM_SINGLE_TRUE=''
> GMX_PPC_ALTIVEC_FALSE=''
> GMX_PPC_ALTIVEC_TRUE=''
> GMX_PREFETCH_FORCES_FALSE=''
> GMX_PREFETCH_FORCES_TRUE='#'
> GMX_SOFTWARE_SQRT_FALSE='#'
> GMX_SOFTWARE_SQRT_TRUE=''
> GMX_THREAD_FALSE=''
> GMX_THREAD_TRUE='#'
> GMX_X86_64_SSE2_FALSE=''
> GMX_X86_64_SSE2_TRUE=''
> GMX_X86_64_SSE_FALSE=''
> GMX_X86_64_SSE_TRUE=''
> INCLUDES=''
> INSTALL_DATA='${INSTALL} -m 644'
> INSTALL_PROGRAM='${INSTALL}'
> INSTALL_SCRIPT='${INSTALL}'
> INSTALL_STRIP_PROGRAM='${SHELL} $(install_sh) -c -s'
> LDFLAGS='-L/users/aroberts/fftw3/lib'
> LIBOBJS=''
> LIBS='-L/users/aroberts/fftw3/lib -lfftw3'
> LIBSUFFIX=''
> LIBTOOL=''
> LN_S=''
> LTLIBOBJS=''
> MAKEINFO='${SHELL}
> /users/aroberts/gromacs-3.3.1/config/missing --run
> makeinfo'
> MDLIB_LIBOBJS=' qm_gaussian.lo'
> MPICC='mpicc'
> OBJDUMP=''
> OBJEXT='o'
> PACKAGE='gromacs'
> PACKAGE_BUGREPORT='gmx-users at gromacs.org'
> PACKAGE_NAME='GROMACS'
> PACKAGE_STRING='GROMACS 3.3.1'
> PACKAGE_TARNAME='gromacs'
> PACKAGE_VERSION='3.3.1'
> PATH_SEPARATOR=':'
> RANLIB=''
> RPM=''
> SET_MAKE=''
> SHARED_VERSION_INFO='4:0:0'
> SHELL='/bin/sh'
> STRIP=''
> USE_X11_FALSE=''
> USE_X11_TRUE=''
> VERSION='3.3.1'
> X_CFLAGS=''
> X_EXTRA_LIBS=''
> X_LIBS=''
> X_PRE_LIBS=''
> ac_ct_AR=''
> ac_ct_AS=''
> ac_ct_CC=''
> ac_ct_CXX=''
> ac_ct_DLLTOOL=''
> ac_ct_F77=''
> ac_ct_OBJDUMP=''
> ac_ct_RANLIB=''
> ac_ct_STRIP=''
> am__fastdepCC_FALSE='#'
> am__fastdepCC_TRUE=''
> am__fastdepCXX_FALSE=''
> am__fastdepCXX_TRUE=''
> am__include='include'
> am__leading_dot='.'
> am__quote=''
> am__tar='pax -L -x ustar -w "$$tardir"'
> am__untar='pax -r'
> bindir='${exec_prefix}/bin'
> build='i686-pc-linux-gnu'
> build_alias=''
> build_cpu='i686'
> build_os='linux-gnu'
> build_vendor='pc'
> datadir='${prefix}/share'
> exec_prefix='/users/aroberts/gromacs_3.3.1'
> host='i686-pc-linux-gnu'
> host_alias=''
> host_cpu='i686'
> host_os='linux-gnu'
> host_vendor='pc'
> includedir='${prefix}/include'
> infodir='${prefix}/info'
> install_sh='/users/aroberts/gromacs-3.3.1/config/install-sh'
> libdir='${exec_prefix}/lib'
> libexecdir='${exec_prefix}/libexec'
> localstatedir='${prefix}/var'
> mandir='${prefix}/man'
> mkdir_p='mkdir -p --'
> oldincludedir='/usr/include'
> prefix='/users/aroberts/gromacs_3.3.1'
> program_transform_name='s,$$,_mpi,'
> sbindir='${exec_prefix}/sbin'
> sharedstatedir='${prefix}/com'
> sysconfdir='${prefix}/etc'
> target_alias=''
>
> ## ----------- ##
> ## confdefs.h. ##
> ## ----------- ##
>
> #define BUILD_MACHINE "Linux 2.4.18-14smp i686"
> #define BUILD_TIME "Thu Nov 2 01:05:30 MST 2006"
> #define BUILD_USER "aroberts at ll02"
> #define F77_OR_C_FUNC(name,NAME) name
> #define F77_OR_C_FUNC_(name,NAME) name
> #define GMX_MPI
> #define GMX_QMMM_GAUSSIAN
> #define GMX_SOFTWARE_SQRT
> #define HAVE_INTTYPES_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_STRING_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_UNISTD_H 1
> #define PACKAGE "gromacs"
> #define PACKAGE_BUGREPORT "gmx-users at gromacs.org"
> #define PACKAGE_NAME "GROMACS"
> #define PACKAGE_STRING "GROMACS 3.3.1"
> #define PACKAGE_TARNAME "gromacs"
> #define PACKAGE_VERSION "3.3.1"
> #define VERSION "3.3.1"
>
> configure: exit 1
>
> .
>
>
>
>
> _______________________________________________
> gmx-users mailing list gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
--
Dr. Carsten Kutzner
Max Planck Institute for Biophysical Chemistry
Theoretical and Computational Biophysics Department
Am Fassberg 11
37077 Goettingen, Germany
Tel. +49-551-2012313, Fax: +49-551-2012302
http://www.mpibpc.mpg.de/research/dep/grubmueller/
http://www.gwdg.de/~ckutzne
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