[gmx-users] Atom q2 not found in rtp database in residue TRP
Mark.Abraham at anu.edu.au
Tue Nov 7 01:32:07 CET 2006
Joern Lenz wrote:
>>>QUESTION: When i start pdb2gmx there always occurs the same error:
>>>"Atom q2 not found in rtp database in residue TRP"
>>>I cannot recognize where this error comes from and so i am not able to fix
>>>this error. Has anyone got an idea ?
>>check that the columns in your pdb file are correct.
>>search for q2 in your pdb file.
> I checked both suggestions but the error is still there.
> what can i further do to run pdb2gmx correctly ?
Tell us some useful diagnostic information.
Did you compare your PDB file to the syntax available here
http://www.rcsb.org/pdb/static.do?p=file_formats/pdb/index.html and it
Did you find q2 with a text search or not?
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