[gmx-users] Simulating Polymer in GROMACS

[Karthikeyan Pasupathy]

I want to simulate Dendrimers in water using gromacs.
i have been having trouble from the first step (using pdb2gmx)

I have attached the PDB file of the dendrimer.

Can somebody teach me/ tell me how to go about simulating non-amino acids /
polymers like this in GROMACS ?

Is there any online tutorial for this?

Thanks,
Karthikeyan
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