[gmx-users] Simulating Polymer in GROMACS

Karthikeyan Pasupathy karthik3k4md at gmail.com
Mon Nov 20 11:09:27 CET 2006

I want to simulate Dendrimers in water using gromacs.
i have been having trouble from the first step (using pdb2gmx)

I have attached the PDB file of the dendrimer.

Can somebody teach me/ tell me how to go about simulating non-amino acids /
polymers like this in GROMACS ?

Is there any online tutorial for this?

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20061120/3d560861/attachment.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: PAMAM.zip
Type: application/zip
Size: 24682 bytes
Desc: not available
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20061120/3d560861/attachment.zip>

More information about the gromacs.org_gmx-users mailing list