[gmx-users] How to define the direaction of AFM pulling?

Mark Abraham Mark.Abraham at anu.edu.au
Tue Nov 21 02:00:27 CET 2006

clark wrote:
> Dear all,
> Rencently I am confused about the AFM pulling function for PMF 
> calculation in Gromacs3.3.1. I don't konw how to define the direction of 
> pulling and how to combine these options:afm_dir, afm_init,group, 
> reference_group and reftype. Would someone please tell me how to use them.

No, but I will tell you to look at section 6.2 of the manual and then
come back with specific questions if you have them :-)


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