[gmx-users] Errors compiling Gromacs 3.2.1 on Mac OS X 10.4.8 (Intel Mac)

Chze Ling Wee chzelingwee at gmail.com
Sat Nov 25 20:51:04 CET 2006


Hi - I am having trouble compiling the non-MPI version of Gromacs 3.2.1 on
Mac OS X 10.4.8 on an Intel Mac.
I am compiling against FFTW 2.1.5.

I've tried:

export CPPFLAGS=-I/Users/chzelingwee/lib/fftw-2.1.5 /include
export LDFLAGS=-L/Users/chzelingwee/lib/fftw-2.1.5/lib
make distclean
./configure --prefix=/Users/chzelingwee/bin/gromacs-3.2.1 --disable-float
--enable-all-static --without-x --with-fft=fftw2
make

'make' runs for a bit before exiting with an error (I've only shown the
final few lines):

========================================================================

cc -DHAVE_CONFIG_H -I. -I. -I../../src -I../../include
-DGMXLIBDIR=\"/Users/chzelingwee/bin/gromacs-3.2.1/share/top\"
-I/Users/chzelingwee/lib/fftw-2.1.5/include -I/usr/include/libxml2 -O6
-fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double
-funroll-all-loops -I/usr/include/libxml2 -MT innerc.lo -MD -MP -MF
.deps/innerc.Tpo -c innerc.c -o innerc.o
/bin/sh ../../libtool --mode=compile cc  -O6 -fomit-frame-pointer
-finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops
-I/usr/include/libxml2 -c -o x86_cpuid.lo `test -f 'x86_cpuid.s' || echo
'./'`x86_cpuid.s
cc -O6 -fomit-frame-pointer -finline-functions -Wall -Wno-unused
-malign-double -funroll-all-loops -I/usr/include/libxml2 -c x86_cpuid.s -o
x86_cpuid.o
x86_cpuid.s:62:Expected comma after segment-name
make[3]: *** [x86_cpuid.lo] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all] Error 2
make: *** [all-recursive] Error 1

========================================================================

Can anyone help?

Cheers
Chze Ling

--
Chze Ling Wee
Department of Biochemistry
University of Oxford
South Parks Road
Oxford
OX1 3QU
U.K.
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