[gmx-users] HBond frequency

[liu xin]

Thanks everyone :)
Finally I've got the map using xpm2ps
I'm new to gromacs and Linux, so it will take some time to learn the script
language.


On 10/1/06, Erik Marklund <erikm at xray.bmc.uu.se> wrote:
>
> ----- Original Message -----
> From: "David van der Spoel" <spoel at xray.bmc.uu.se>
> To: "Discussion list for GROMACS users" <gmx-users at gromacs.org>
> Sent: Saturday, September 30, 2006 2:37 AM
> Subject: Re: [gmx-users] HBond frequency
>
>
> > liu xin wrote:
> >> Thanks, but when ever I used ACDsee to visualize the generated
> hbmap.xpm,
> >> I've got nothing, and ACDsee keeps on telling me that "Bad or
> >> unrecognized image header".
> >>
> > Try the gimp or use xpm2ps first.
> >
> > --
> > David.
>
> Or analyze the data by other means. The image data is uncompressed and
> stored row-wise in the file, making it relatively easy to extract, in your
> case, hbond frequencies, using most any scripting language.
>
> /Erik
>
> > ________________________________________________________________________
> > David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
> > Dept. of Cell and Molecular Biology, Uppsala University.
> > Husargatan 3, Box 596,  75124 Uppsala, Sweden
> > phone: 46 18 471 4205 fax: 46 18 511 755
> > spoel at xray.bmc.uu.se spoel at gromacs.org   http://folding.bmc.uu.se
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