[gmx-users] AFM pulling
ewalton at MIT.EDU
Mon Sep 4 21:20:37 CEST 2006
From a few months ago:
> I posted the following message a few weeks ago and just noticed that
> I was wrong. The column order is actually:
> Time, Ref. X, Ref. Y, Ref. Z, Pull X, Spring X, Pull Y, Spring Y,
> Pull Z, Spring Z
> Not intuitive, but it does make it very easy to make sure your spring
> starts in the same position as your pull group :)
> This doesn't change anything about my script, so those of you who
> have it, don't worry, the script is right. It was just an error in
> the previous post.
> -Emily Walton
You can search the mailing list archives at: http://www.gromacs.org/
> Message: 4
> Date: Mon, 4 Sep 2006 16:51:34 +0000 (GMT)
> From: Ariel Alvarez <choique_pacifico at yahoo.com>
> Subject: [gmx-users] AFM pulling
> To: Lista GMX-Users <gmx-users at gromacs.org>
> Message-ID: <20060904165134.53881.qmail at web30301.mail.mud.yahoo.com>
> Content-Type: text/plain; charset="iso-8859-1"
> Is there anyone who can tell me what are the 10 colums in my
> pull.pdo. The first is time. And the others? I can't find this
> information in the manual. It says that pull.pdo contains the
> calculated forces. Are the rest of the colums the coordinates of
> the forces pulling each atom of the molecule? (I'm pulling water
> molecules). Thank you a lot. Ariel
> Preguntá. Respondé. Descubrí.
> Todo lo que querías saber, y lo que ni imaginabas,
> está en Yahoo! Respuestas (Beta).
> Probalo ya!
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