[gmx-users] the gmxdump reveals less parameters than i expect

Rongliang Wu wurl04 at iccas.ac.cn
Wed Sep 13 10:48:57 CEST 2006


hello,gmx-users

	i used grompp to get an tpr and used the gmxdump command to see if the parameters are right,
	but i found there are less parameters than i expect:
	
	            functype[12]=ANGLES, thA= 1.09270e+02, ctA= 3.22384e+02, thB= 1.0927
0e+02, ctB= 3.22384e+02
            functype[13]=ANGLES, thA= 1.08450e+02, ctA= 3.59227e+02, thB= 1.0845
0e+02, ctB= 3.59227e+02
            functype[14]=ANGLES, thA= 1.07740e+02, ctA= 7.53624e+02, thB= 1.0774
0e+02, ctB= 7.53624e+02
            functype[15]=ANGLES, thA= 1.18240e+02, ctA= 6.72400e+02, thB= 1.1824
0e+02, ctB= 6.72400e+02
            functype[16]=ANGLES, thA= 1.05270e+02, ctA= 1.00483e+03, thB= 1.0527
0e+02, ctB= 1.00483e+03

	here, i have 6 types of angles while it told me there are only 5 angle typeps in,
	and the parameters in the ff*bon.itp are right, the [ angles ] part in the top are also right?
	
	why? and i added the parameters in ff*bon.itp to topol.top file and grompp again,
	the same results are shown.
		
	what does this part mean, which is from the gmxdump commmand? 
	

regards!

thanks!
 				

        Rongliang Wu
        wurl04 at iccas.ac.cn
          2006-09-13


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