[gmx-users] grompp -f em.mdp -c speptide.pdb -p \#spetide.top.1#\ -o speptide_empdb.tpr grompp -f em.mdp -c speptide.pdb -p \#spetide.top.1#\ -o speptide_empdb.tpr

[chris.neale at utoronto.ca]

> On top of Mark's point, many programs in GROMACS uses suffix to  
> determine the file type. To use those files with name beginning #, you
> shall remove the leading and trailing # in the filename by renaming.

In some cases you may not want to rename a file. In this case you can  
use a symbolic link.

ln -s \#spetide.top.1# link.top

grompp -p link.top