[gmx-users] nstlist with vdw only

Nicolas Schmidt nicolas-schmidt at gmx.de
Mon Aug 20 22:26:02 CEST 2007


Hello again,

just a quick question:

my simulation runs with vdwtype = cut-off  and no charges, so in my understanding I can set rcoulomb to whatever I want, since there is nothing that's got to be calculated.

Within this configuration (rlilst = r_vdw, nstlist = 1) up to 50% of the computation-time is used for ns-pairs, only 30-35% for LJ. Am I doing something wrong here? How can this be done more efficient.

Thanks to everyone

posted the .top and .mdp file along with my output-file


-- 
Psssst! Schon vom neuen GMX MultiMessenger gehört?
Der kanns mit allen: http://www.gmx.net/de/go/multimessenger
-------------- next part --------------
A non-text attachment was scrubbed...
Name: gmx_ethane_0365_32768.e74269
Type: application/octet-stream
Size: 6302 bytes
Desc: not available
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20070820/1c17a433/attachment.obj>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: ethane.itp
Type: application/octet-stream
Size: 689 bytes
Desc: not available
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20070820/1c17a433/attachment-0001.obj>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: ethane_32768.top
Type: application/octet-stream
Size: 97 bytes
Desc: not available
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20070820/1c17a433/attachment-0002.obj>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: md.mdp
Type: application/x-mdp
Size: 15418 bytes
Desc: not available
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20070820/1c17a433/attachment.bin>


More information about the gromacs.org_gmx-users mailing list