[gmx-users] Incorporate two files in Gromacs

[Tsjerk Wassenaar]

Hi Rohit,

You have to have one file. But is that so much trouble?

Tsjerk

On 8/26/07, rohit gole <merohisg at yahoo.co.in> wrote:
> I want to simulate two proteins, so for that is there any process to give
> both files as an input and then fix the initial distance between them on my
> own choice or do I need to make one separate file having both proteins and
> then use this file as an input to GROMACS.
>
> Yang Ye <leafyoung at yahoo.com> wrote:
>  Please explain your purpose more clearly.
>
> On 8/25/2007 9:47 PM, rohit gole wrote:
> > Hi,
> >
> > Is there any way in GROAMCS to incorporate two PDB files separately
> > and then do simulation instead of appending both files to create a
> > single file?
> >
> > If yes, then how the distance can be manipulated between the two
> > proteins from the files?
> >
> > TIA
> >
> > Rohit
> > IIT kanpur
> >
> >
> ------------------------------------------------------------------------
> > Why delete messages? Unlimited storage is just a click away.
> >
> >
> >
> ------------------------------------------------------------------------
> >
> > _______________________________________________
> > gmx-users mailing list gmx-users at gromacs.org
> > http://www.gromacs.org/mailman/listinfo/gmx-users
> > Please search the archive at http://www.gromacs.org/search before posting!
> > Please don't post (un)subscribe requests to the list. Use the
> > www interface or send it to gmx-users-request at gromacs.org.
> > Can't post? Read
> http://www.gromacs.org/mailing_lists/users.php
>
> _______________________________________________
> gmx-users mailing list gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read
> http://www.gromacs.org/mailing_lists/users.php
>
>
>
>  ________________________________
>  Get the freedom to save as many mails as you wish. Click here to know how.
>
>
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read
> http://www.gromacs.org/mailing_lists/users.php
>


-- 
Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
F: +31-30-2537623