[gmx-users] g_hbond command problem

wangcl wangchunlei at sinap.ac.cn
Mon Dec 3 12:08:49 CET 2007

Dear all users,
   I want to analyze Hydrogen-bond among water molecules using "g_hbond"
command. We use periodic boundary conditions in the simulation box. 
   The question is: I don't know whether this "g_hbond" tool considers the
"periodic boundary conditions", that is, 
     whether this tool considers Hydrogen-bonds formed between BOUNDARY
water molecules due to pbc. 
  GROMACS 3.3.1 is used.
Thank you!

Chunlei Wang

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