[gmx-users] g_hbond command problem
wangchunlei at sinap.ac.cn
Mon Dec 3 12:08:49 CET 2007
Dear all users,
I want to analyze Hydrogen-bond among water molecules using "g_hbond"
command. We use periodic boundary conditions in the simulation box.
The question is: I don't know whether this "g_hbond" tool considers the
"periodic boundary conditions", that is,
whether this tool considers Hydrogen-bonds formed between BOUNDARY
water molecules due to pbc.
GROMACS 3.3.1 is used.
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