[gmx-users] pbc problem

[tangxuan]

hi, all
My protein has 16 subunits. After I use trjconv '-pbc nojump' to remove
the jump in the whole protein, there are no jump to each subunits.
However, when i check pdb file of the first frame, it is shown that  the
subunits are not in right position. The area of interface between some
subunits  is zero, but it should not be.  Could you give me some
suggestions how to solve this problem?

Thanks

Tang