[gmx-users] problem with npt

pragya chohan pragyachohan at hotmail.com
Sat Dec 15 15:42:08 CET 2007

I wrote yes to generate velocity. Can that be a reason for the problem? Since I am doing membrane simulation it is advised to do production runs in npt thats the only other difference.
> Date: Sat, 15 Dec 2007 06:03:27 +1100
> From: Mark.Abraham at anu.edu.au
> To: gmx-users at gromacs.org
> Subject: Re: [gmx-users] problem with npt
> pragya chohan wrote:
> > 
> > thanks for your help.
> > My system ran fine for 250 ps but later the bilayer deformed very much.
> What was your system preparation protocol - i.e. minimization and 
> equilibration? See 
> http://wiki.gromacs.org/index.php/Steps_to_Perform_a_Simulation
> Mark
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