[gmx-users] image centering
myunggi at gmail.com
Tue Dec 25 22:48:29 CET 2007
I have a membrane simulation trajectory,
in which the solvent (water and ions) is separated by lipid bilayer.
I want to center the solvent so that the membrane is separated by two layers
at the bottom and top in the unit cell.
I have tried the followings.
trjconv -f ../Eq9/eq9.xtc -o cen2.xtc -n ../memb.ndx -pbc cluster
trjconv -f ../Eq9/eq9.xtc -o cen2.xtc -s ../Eq9/eq9.gro -n ../memb.ndx
-center rect -pbc whole
Both pbc and center didn't work.
Is there any way to center the solvent?
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