[gmx-users] problem in bilayer simulation

Alan Dodd anoddlad at yahoo.com
Sun Dec 30 16:43:54 CET 2007

Does the water move through the bilayer, or is this a PBC thing?  It sounds like your bilayer is translating upwards?

----- Original Message ----
From: pragya chohan <pragyachohan at hotmail.com>
To: gmx-users at gromacs.org
Sent: Sunday, December 30, 2007 3:25:51 PM
Subject: [gmx-users] problem in bilayer simulation

Dear Users
I am doing membrane simulation alternating nvt and npt during production run. After 1250 ps the water from upper leaflet goes towards the lower leaflet and a very thin layer of water remains in the upper leaflet. Is it a common occurance or am I doing some mistake?
Please help

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