[gmx-users] problem in bilayer simulation

[pragya chohan]

can you please suggest what should i do? I have pbc = xyz in my md.mdp> Date: Mon, 31 Dec 2007 08:17:15 +1100> From: Mark.Abraham at anu.edu.au> To: gmx-users at gromacs.org> Subject: Re: [gmx-users] problem in bilayer simulation> > pragya chohan wrote:> > Dear Users> > I am doing membrane simulation alternating nvt and npt during production > > run. After 1250 ps the water from upper leaflet goes towards the lower > > leaflet and a very thin layer of water remains in the upper leaflet. Is > > it a common occurance or am I doing some mistake?> > Probably you are observing an artefact of periodic boundary conditions - > see http://wiki.gromacs.org/index.php/Periodic_Boundary_Conditions for > advice here.> > Mark> _______________________________________________> gmx-users mailing list gmx-users at gromacs.org> http://www.gromacs.org/mailman/listinfo/gmx-users> Please search the archive at http://www.gromacs.org/search before posting!> Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-request at gromacs.org.> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
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