[gmx-users] Fwd: Residue 'COA' not found in residue topology

Tsjerk Wassenaar tsjerkw at gmail.com
Mon Dec 31 09:12:16 CET 2007


Please keep discussions on the list, there may be others which have the same
Also try to put some effort in writing a well readable e-mail. User list
conversations are not school notes.

In answer to your question... I'd start with a literature search. Plenty of
people will have performed simulations with CoA.


---------- Forwarded message ----------
From: vijay kumar hinge vijay <vijaybioinfo2 at gmail.com>
Date: Dec 30, 2007 11:57 AM
Subject: Residue 'COA' not found in residue topology
To: tsjerkw at gmail.com

hii sir
thanks for reply and sory for aproaching through your personal mail with out
your consent
its may be elimentery question but let me ask (honestly)
u mean to say there is no topology parameters available for COA  residue
with gromos force field.so i need to use forcefield other than gromas like
charm or amber.but those are paid software which are not affordable to our
if i get some where  these toplogy is these  compatible for MD simulation by
using gromacs.is any other way to solve problm
thanking you
SUN-CoE in Medical Bioinformatics
Computational and Functional Genomics Laboratory,
Centre for DNA Fingerprinting and Diagnostics (CDFD),
Gundipet, Hyderabad-500 076, INDIA

Ph.No : +91 9849220874

Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
F: +31-30-2537623
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