[gmx-users] problem with genion

David van der Spoel spoel at xray.bmc.uu.se
Fri Jan 5 14:02:46 CET 2007

Abil Aliev wrote:
> While using genion with -np 3, i get 2 lines of Replacing sol. xxx with 
> Na and it hangs up. With -np 1 it works fine and replaces 1 SOL with Na. 
> I thought it might be my system, so went to /tutor/speptide, but it was 
> the same behaviour. I am using gromacs 3.3.1. As I recall genion worked 
> fine under 3.2.
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there is a problem compiling gromacs using gcc 4.x that may cause this. 
see a recent bugzilla entry about it.

David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se

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