Tsjerk Wassenaar tsjerkw at gmail.com
Thu Jan 18 08:36:00 CET 2007

Hi Carlos,

It is well possible. You can use the GROMOS force fields > 43a5. I'm
not sure whether the sugar building blocks are already in there,
otherwise you can try to add them. The parameters themselves have been
published by the Gromos team (search for Roberto Lins).



On 1/18/07, Carlos Javier Nuñez Aguero <carlosjn at ce.fis.unam.mx> wrote:
> Hi,
> I have two simple questions,
> o is possible to make MDs of poly-saccharides with the Gromacs software?
> o If yes,
>    what force field have the appropriate parameters? only one FF?
> Thanks,
> Carlos Javier
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Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
F: +31-30-2537623

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