[gmx-users] [Beginner] How can I generate .gro and .top?

[Marcelo de Freitas Lima]

Dear all,

How can I generate a ".gro" and a ".top" from a ".pdb" file of a  
synthetic polymer residue (548 atoms with a random distribution of  
monomers)?
There is some tutorial to use gromacs with strutures like that,  
instead proteins?
Problem:
The PRODRG webserver can't convert my structure, because there is so  
many atoms.

Thank you all,

All the best,

Marcelo


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