[gmx-users] protein-protein complex

[fulya caglar]

Hi  all !
  We want to MD simulation of a protein-protein complex.We can't prepare itp. and gro files with PRODRG server.Because there are too many atoms in my ligand (which is a protein). How can we prepare the .itp and .gro files?Are there any tutorial for a protein protein complex?
   
   
  Best Regard
 Fulya
   
  Hacettepe University
  Turkey

       
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