[gmx-users] about truncated octahedral periodic box

Yang Ye leafyoung at yahoo.com
Tue Jul 3 15:04:39 CEST 2007

You shall use trjconv -ur compact -pbc atom to transform your model.

This is my second time in the week answering this question.

On 7/3/2007 5:47 PM, Rui Li wrote:
> Dear all,
>  I use a truncated octahedral periodic box. After I use genbox to add water
> molecules, I find the protein is not at the center of the water box. I don't know
> why it will depart the center.
> Thank you in advance.
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