[gmx-users] Solvent_box

[Yang Ye]

Which visualization software you have used?

On 7/12/2007 1:47 PM, pkmukher wrote:
> Hi,
>
>   I am trying to build a triclinic solvent box around
> two.pdb using the following commands
>
> editconf -bt triclinic -f two.pdb -o three.pdb -d 0.9 -box
> 20 10 10
> genbox -cp three.pdb -cs spc216.gro -o four.pdb -p two.top
>
>
>
> However the generated pdb file four.pdb shows a cubic
> solvation box instead of a triclinic box.Could you please
> suggest how i should modify the command.Thanks
>
>
>
> Prasenjit Kumar Mukherjee
> Graduate Student
> Department of Medicinal Chemistry
> School of Pharmacy
> University of Mississippi
> USA
>
> Cell   - 662 380 0146
> Office - 662 915 1286 
>
>
>
>
>
>
>
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