[gmx-users] Chimera GROMACS support

[David Mobley]

All,

Just in case there are those on here who don't know, Chimera is a nice
viewing program for molecular structures, trajectories, etc. It also
has a lot of bells and whistles relating to preparing structures for
simulation (i.e. building in missing residues/loops, etc).

David


On 2/27/07, Eric Pettersen <pett at cgl.ucsf.edu> wrote:
> Hi,
>  The latest snapshot release of UCSF Chimera (versions 1.2348-50) now has
> explicit support for GROMACS trajectories.  It requires .tpr and .trr files
> as input.  If you try it out and run into problems or have suggestions, let
> me know.
>  The Chimera home page is here:
>
> http://www.cgl.ucsf.edu/chimera
>
>  Follow the "snapshot" link to reach the snapshot section of the download
> page.  The home page also describes the fairly wide variety of features that
> Chimera has.  You can find documentation for just the MD-specific features
> here:
>
> http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/movie/framemovie.html
>
> There's also an MD tutorial here:
>
> http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/tutorials/ensembles2.html
>
> though you might want to do the "Getting Started" tutorial first:
>
> http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/frametut.html
>
> --Eric
>
>
>
>                         Eric Pettersen
>
>                         UCSF Computer Graphics Lab
>
>                         pett at cgl.ucsf.edu
>
>                         http://www.cgl.ucsf.edu
>
>
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