[gmx-users] peptide out of box

[Mark Abraham]

> hI
>
> My -d parameter is 1.1 in editconf. Is that alright?

>> About the 2.2nm: if it is the real size of your box, I agree with the
>> answer of Mark, the box is probably to short. But if it's your "-d"
>> parameter for editconf, it is largely sufficient.

Probably. Please read man editconf and the first few chapters of the
manual if this is not clear.

Mark