[gmx-users] peptide out of box

Mark Abraham mark.abraham at anu.edu.au
Wed Mar 14 02:08:57 CET 2007

> hI
> My -d parameter is 1.1 in editconf. Is that alright?

>> About the 2.2nm: if it is the real size of your box, I agree with the
>> answer of Mark, the box is probably to short. But if it's your "-d"
>> parameter for editconf, it is largely sufficient.

Probably. Please read man editconf and the first few chapters of the
manual if this is not clear.


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