[gmx-users] g_mindist

[OZGE ENGIN]

Hi, 

I forgot to ask  my other question :) When I use the g_mindist command, it asks me to select two groups for which the distance will be calculated. I am confused for the following: I want to calculate the minimum distance among three side chains of my molecule in all combinations. So, if I choose the side chain (system 8) option for this command twice, which side chains will be taken into consideration? 

Thanks in advance 

Ozge Engin