[gmx-users] gen_vel

[Yang Ye]

according to what you have described, it is correct. is your reference 
structure wrong for RMSD calculation?

On 3/27/2007 8:56 PM, özge kül wrote:
> HI EVERYBODY,
>  
> I HAVE A PROBLEM WITH gen_vel.IF I MAKE AN ANALYZE WITH POSITION 
> RESTRAINT I USED gen_vel=yes.AFTER FOR FULL MDP I USED 
> gen_vel=no.AFTER THAT I USED gen_vel=no FOR AGAIN FULL.MDP.BUT I GOT 
> VERY BAD RMSD GRAPHICS.ANY HELP ABOUT WHAT IS THE MEANING OF 
> gen_vel=no,gen-vel=yes?
>  
> THANK YOU...
>
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