[gmx-users] help with g_sdf

[Dallas B. Warren]

> Please can someone help me with g_sdf
> I would like to calculate the sdfs of two different types of 
> lipid headgroups around another species in my system.
> 
> Specifically I have 119 lipids of one type and 116 of the 
> other- do I need to normalise to account for this difference? 
> If so, any advice as to how I would go about this?

Simply make them part of the same index group that you use to generate
the SDF to.

Catch ya,

Dr. Dallas Warren
Lecturer
Department of Pharmaceutical Biology and Pharmacology
Victorian College of Pharmacy, Monash University
381 Royal Parade, Parkville VIC 3010
dallas.warren at vcp.monash.edu.au
+61 3 9903 9524
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When the only tool you own is a hammer, every problem begins to resemble
a nail.