[gmx-users] mdrun 3.3.2 crash - gmx_sumi called in serial run with RF
David van der Spoel
spoel at xray.bmc.uu.se
Thu Nov 1 17:25:38 CET 2007
Michel Cuendet wrote:
> Hi,
>
> I just installed gmx 3.3.2 on i686 and x86_64 linux architectures with
> kernel 2.4 / 2.6, and gcc 3.3.2 / 4.1.1 respectively. I get the
> following error message when running mdrun (with input files working
> with version 3.3.1):
>
> -------------------------------------------------------
> Program mdrun, VERSION 3.3.2
> Source code file: network.c, line: 437
>
> Routine should not have been called:
> gmx_sumi
> -------------------------------------------------------
Oops, I introduced a fix here between 3.3.1 and 3.3.2. This has been
fixe din CVS now. If you wish you can fix it in your own tree by replacing
gmx_sumi(1,&bSumForces,cr);
if (PAR(cr))
gmx_sumi(1,&bSumForces,cr);
else
bSumForces = FALSE;
in src/mdlib/rf_util.c on line 162
thanks for reporting.
>
> This happens even when running mdrun -rerun, and on both i686 and x86_64
> architectures. The crash happens with reaction field, but not with
> cutoff on the electrostatics.
>
> I ran the gmxtest suite, and the error appears in
> ./gmxtest/complex/acetonitrilRF, which is also the only testcase unsing
> reaction field...
>
> Cheers,
> M
>
--
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
spoel at xray.bmc.uu.se spoel at gromacs.org http://folding.bmc.uu.se
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
More information about the gromacs.org_gmx-users
mailing list