[gmx-users] can not pass gmxtest

[Li Qiang]

hi all,

I newly installed GROMACS on UBUNTU 7.10 from Synaptic Package
Manager(SPM). However, it can not pass the gamxtest with log as below,
but Tutorials seems OK. 
Actually I try to compile myself at the beginning. It is weird that the
self-compiled one can pass the test but failed to run Tutorials with
Segmental fault at PR MD step.

Does anyboby know how to solve it? and how to uninstall GROMACS clear?
thanks a lot.

output from gmxtest:
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
*** glibc detected *** mdrun: realloc(): invalid next size: 0x08076ec8
***
======= Backtrace: =========
/lib/tls/i686/cmov/libc.so.6[0xb7a45b0c]
/lib/tls/i686/cmov/libc.so.6(realloc+0x106)[0xb7a47a66]
/usr/lib/libgmx.so.4(save_realloc+0x39)[0xb7cbe439]
/usr/lib/libgmx.so.4(mk_graph+0x494)[0xb7cadde4]
mdrun[0x8059f50]
mdrun[0x805a72a]
/lib/tls/i686/cmov/libc.so.6(__libc_start_main+0xe0)[0xb79f0050]
mdrun[0x804a491]
======= Memory map: ========
08048000-08062000 r-xp 00000000 08:04 2490502    /usr/bin/mdrun
08062000-08063000 rw-p 00019000 08:04 2490502    /usr/bin/mdrun
08063000-08085000 rw-p 08063000 00:00 0          [heap]
b7800000-b7821000 rw-p b7800000 00:00 0 
b7821000-b7900000 ---p b7821000 00:00 0 
b79cc000-b79cd000 rw-p b79cc000 00:00 0 
b79cd000-b79cf000 r-xp 00000000 08:04
2747181    /lib/tls/i686/cmov/libdl-2.6.1.so
b79cf000-b79d1000 rw-p 00001000 08:04
2747181    /lib/tls/i686/cmov/libdl-2.6.1.so
b79d1000-b79d5000 r-xp 00000000 08:04
2486327    /usr/lib/libXdmcp.so.6.0.0
b79d5000-b79d6000 rw-p 00003000 08:04
2486327    /usr/lib/libXdmcp.so.6.0.0
b79d6000-b79d8000 r-xp 00000000 08:04
2485527    /usr/lib/libXau.so.6.0.0
b79d8000-b79d9000 rw-p 00001000 08:04
2485527    /usr/lib/libXau.so.6.0.0
b79d9000-b79da000 rw-p b79d9000 00:00 0 
b79da000-b7b1e000 r-xp 00000000 08:04
2747161    /lib/tls/i686/cmov/libc-2.6.1.so
b7b1e000-b7b1f000 r--p 00143000 08:04
2747161    /lib/tls/i686/cmov/libc-2.6.1.so
b7b1f000-b7b21000 rw-p 00144000 08:04
2747161    /lib/tls/i686/cmov/libc-2.6.1.so
b7b21000-b7b24000 rw-p b7b21000 00:00 0 
b7b24000-b7c11000 r-xp 00000000 08:04
2486347    /usr/lib/libX11.so.6.2.0
b7c11000-b7c15000 rw-p 000ed000 08:04
2486347    /usr/lib/libX11.so.6.2.0
b7c15000-b7c2a000 r-xp 00000000 08:04
2488182    /usr/lib/libICE.so.6.3.0
b7c2a000-b7c2c000 rw-p 00014000 08:04
2488182    /usr/lib/libICE.so.6.3.0
b7c2c000-b7c2d000 rw-p b7c2c000 00:00 0 
b7c2d000-b7c34000 r-xp 00000000 08:04 2487000    /usr/lib/libSM.so.6.0.0
b7c34000-b7c35000 rw-p 00006000 08:04 2487000    /usr/lib/libSM.so.6.0.0
b7c35000-b7c58000 r-xp 00000000 08:04
2747187    /lib/tls/i686/cmov/libm-2.6.1.so
b7c58000-b7c5a000 rw-p 00023000 08:04
2747187    /lib/tls/i686/cmov/libm-2.6.1.so
b7c5a000-b7c6e000 r-xp 00000000 08:04
2747206    /lib/tls/i686/cmov/libnsl-2.6.1.so
b7c6e000-b7c70000 rw-p 00013000 08:04
2747206    /lib/tls/i686/cmov/libnsl-2.6.1.so
b7c70000-b7c73000 rw-p b7c70000 00:00 0 
b7c73000-b7e27000 r-xp 00000000 08:04
2491023    /usr/lib/libgmx.so.4.0.0
b7e27000-b7e30000 rw-p 001b3000 08:04
2491023    /usr/lib/libgmx.so.4.0.0
b7e30000-b7e35000 rw-p b7e30000 00:00 0 
b7e35000-b7f4a000 r-xp 00000000 08:04 2491025    /usr/lib/libmd.so.4.0.0
b7f4a000-b7f4b000 rw-p 00114000 08:04 2491025    /usr/lib/libmd.so.4.0.0
b7f4b000-b7f4c000 rw-p b7f4b000 00:00 0 
b7f4e000-b7f58000 r-xp 00000000 08:04 2747267    /lib/libgcc_s.so.1
b7f58000-b7f59000 rw-p 0000a000 08:04 2747267    /lib/libgcc_s.so.1
b7f59000-b7f5c000 rw-p b7f59000 00:00 0 
b7f5c000-b7f76000 r-xp 00000000 08:04 2747274    /lib/ld-2.6.1.so
b7f76000-b7f78000 rw-p 00019000 08:04 2747274    /lib/ld-2.6.1.so
bfa98000-bfaad000 rwxp bfa98000 00:00 0          [stack]
bfaad000-bfaae000 rw-p bfaad000 00:00 0 
ffffe000-fffff000 r-xp 00000000 00:00 0          [vdso]
FAILED. Check files in rb1
1 out of 16 simple tests FAILED
FAILED. Check files in acetonitrilRF
FAILED. Check files in dec+water
2 out of 14 complex tests FAILED
All 63 kernel tests PASSED
All 45 pdb2gmx tests PASSED