[gmx-users] coordinate files for molecules consisting of new (non-standard) residues

Teresa Silva teresa.silva at pharmacy.ac.uk
Fri Nov 9 13:47:20 CET 2007

Dear gromacs users,


I am trying to set up a system with new (non-standard) residue blocks to
study polymers and polymer-protein conjugates; however we will not have pdb
files of molecules that we want to study.  


 Is there a way of generating coordinate files and other necessary Gromacs
files using only a sequence of these novel residues instead of the using pdb
file and pdb2gmx?


Thank you




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