[gmx-users] trjorder does not write trajectory file

Justin A. Lemkul jalemkul at vt.edu
Sun Nov 11 15:10:28 CET 2007


Use the -na and -da flags.  trjorder doesn't know how to order the molecules
without these.

-Justin

> Quoting Dmytro Kovalskyy <dikov at imbg.org.ua>:
>
> > > It works fine for me under 3.3.1 - what command line are you issuing?
> > trjorder -f traj.xtc -s topol.tpr -o 5A -nshell 5A -r 0.5
> > >
> > > -Justin
> > >
> > > Quoting Dmytro Kovalskyy <dikov at imbg.org.ua>:
> > >
> > >>
> > >> Trjorder does not write trajectory file, only  nshell.xvg
> > >>
> > >> This is true for 3.3.2 and 3.3.1 versions.
> > >>
> > >> Dima
> > >>
> > >>
> > >> _______________________________________________
> > >> gmx-users mailing list    gmx-users at gromacs.org
> > >> http://www.gromacs.org/mailman/listinfo/gmx-users
> > >> Please search the archive at http://www.gromacs.org/search before
> > >> posting!
> > >> Please don't post (un)subscribe requests to the list. Use the
> > >> www interface or send it to gmx-users-request at gromacs.org.
> > >> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
> > >>
> > >
> > >
> > >
> > > =========================================================
> > >
> > > Justin A. Lemkul
> > > Graduate Research Assistant
> > > Department of Biochemistry
> > > Virginia Tech
> > > Blacksburg, VA
> > > jalemkul at vt.edu | (540) 231-9080
> > > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/
> > >
> > > =========================================================
> > >
> > >
> > > !DSPAM:47367e03304461801161890!
> > >
> > >
> >
> >
> >
>
>
>
> =========================================================
>
> Justin A. Lemkul
> Graduate Research Assistant
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul at vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/
>
> =========================================================



=========================================================

Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul at vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/

=========================================================



More information about the gromacs.org_gmx-users mailing list