[gmx-users] Creating .ndx for TIP5Pwater

[JMandumpal]

Dear David,


I didn't get the desired box length when I tried to use editconf command ( I took the tip5p box from gromacs/tutor directory) . Then, I tried editconf command to generate .gro file using myown water box. It worked!! 


Still, there is a problem. How can I create .ndx file?- I tried  
make_ndx -n tip5p_W.pdb, but it resulted in a message: input/output error.

Could you suggest an alternative way for builing up ndx files?

regards
Jestin

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20071120/1fc24c53/attachment.html>