[gmx-users] commanf for wrapping

[karan syal]

hey...i think trjconv used with options -center tric/rect/zero -pbc whole
should work.
u can make an index file with a group that contains whatever atom u want the
system to be centered around.
 u can choose this center atom group while using index file along with the
above command.

karan

On Nov 21, 2007 3:18 PM, pragya chohan <pragyachohan at hotmail.com> wrote:

>
> hi .... i want to wrap my lipid in water... which centres the lipid in
> water. I know a command for this in amber (iwrap ). Is there a corresponding
> command in gromacs
> thanks for your help
> Pragya Chohan
>
> _________________________________________________________________
> Post free property ads on Yello Classifieds now! www.yello.in
>
> http://ss1.richmedia.in/recurl.asp?pid=221_______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20071121/c9dde8f0/attachment.html>