[gmx-users] commanf for wrapping

karan syal karansyal86 at gmail.com
Wed Nov 21 10:59:03 CET 2007

hey...i think trjconv used with options -center tric/rect/zero -pbc whole
should work.
u can make an index file with a group that contains whatever atom u want the
system to be centered around.
 u can choose this center atom group while using index file along with the
above command.


On Nov 21, 2007 3:18 PM, pragya chohan <pragyachohan at hotmail.com> wrote:

> hi .... i want to wrap my lipid in water... which centres the lipid in
> water. I know a command for this in amber (iwrap ). Is there a corresponding
> command in gromacs
> thanks for your help
> Pragya Chohan
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