[gmx-users] anisotropic pressure coupling for temperature annealing
Mark Abraham
Mark.Abraham at anu.edu.au
Wed Oct 10 07:56:28 CEST 2007
Q733 wrote:
> Dear gmx-users, I used anisotropic p-coupling for lipid bilayers and
> annealed the system from 330K-300K at the ratio of 2 degree/ns.And the x
> dimension and y dimension increased with time in the whole
> procedure, but actually the area/lipid should decrease when tempreture
> decreases. I think there may due to the P couple parameters I used. Now
> I write them here:
>
> tau_p = 2.0 2.0 2.0 0 0 0
> compressibility = 4.5e-6 4.5e-6 4.5e-6 0 0 0
> ref_p = 1 1 1 1 1 1
>
> Is there anything wrong with my parameter? or should I use
>
>
> ref_p = 1 1 1 0 0 0
>
> I saw someone use this ref_p before.
tau_p and ref_p only take one parameter. The form for compressibility
varies with pcoupletype. See manual section 7.3.14
Mark
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