[gmx-users] Visualizing non-rectangular boxes

Ignacio Fernández Galván jellby at yahoo.com
Mon Oct 15 15:14:03 CEST 2007

--- sebastien santini <santini.s at fsagx.ac.be> wrote:

> I think you should use:
> editconf -f config.gro -o config.pdb -visbox 1 1 1
> donot forget to remove the
> and
> from the file if you want to see the box with pymol.
> it works fine for me

With that, I get the same configuration (the shape occupied by the
molecules is still rectangular), but also an elongated dodecahedron
drawn with "CONECT" lines in the pdb...

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