[gmx-users] Visualizing non-rectangular boxes

[Ignacio Fernández Galván]

--- sebastien santini <santini.s at fsagx.ac.be> wrote:

> I think you should use:
> 
> editconf -f config.gro -o config.pdb -visbox 1 1 1
> 
> donot forget to remove the
> MODEL 1
> and
> ENDMDL
> 
> from the file if you want to see the box with pymol.
> 
> it works fine for me

With that, I get the same configuration (the shape occupied by the
molecules is still rectangular), but also an elongated dodecahedron
drawn with "CONECT" lines in the pdb...


      ___________________________________________________________ 
Want ideas for reducing your carbon footprint? Visit Yahoo! For Good  http://uk.promotions.yahoo.com/forgood/environment.html