[gmx-users] Re: Viewing Dodecahedral Systems

[Sean Drummond]

I have run some simulations using a dodechedral box. Worked fine, but
when I view results I get triclinic view. Also the ligand is displaced
from the protein, presumably along the transformed axes. How can I
view the actual dodecahedral box and the ligand-protein complex with
the ligand bound in the protein?

Thanks for your help