Mark.Abraham at anu.edu.au
Mon Oct 22 11:02:51 CEST 2007
> Dear all,
> I have got a pdb file by command g_rmsf and option -oq, and the content
> of the file is like this:
> Could you tell me which column should be the b-factor?
Google is your friend :-) Try "pdb file format"
> B-factor is the
> thermal deviation of the atom, and could you tell me how the gromacs
> gives the values of b-factor for each atom in detail?
If you want to know what GROMACS does in detail, that's why the authors
gave you the source code. There might be a literature source there, but
I think this is more like textbook material, e.g. google "definition
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