[gmx-users] segmentation fault in md

[Mark Abraham]

Rui Li wrote:
> Thank you for your attention.

Please keep correspondence on the list.

> at the tail of pr.log, it prompts:
> 
> t = 0.052 ps: Water molecule starting at atom 35570 can not be settled.
> Check for bad contacts and/or reduce the timestep.Wrote pdb files with previous
> and current coordinates

The advice I gave here 
http://www.gromacs.org/pipermail/gmx-users/2007-September/029579.html 
applies to you too.

Mark