[gmx-users] problem during converting ".pdb" to ".gro"

[David van der Spoel]

Moutusi Manna wrote:
>          I want to perform simulation of
> trans-membrane
> peptide. I have a equilibrated POPC (hydrated)
> bilayer (using CHARMM),containing more than 32,000
> atom. But when I try to convert ".pdb" to ".gro" using
> "pdb2gmx", it shows the following error
> 
> 
> Fatal error:
> Residue "popc" not found in residue topology database
> 
> Please suggest how I can overcome this problem .


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-- 
David van der Spoel, Ph.D.
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205. Fax: +4618511755.
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se